Information for 13-ACGCACGC (Motif 25)

C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C
Reverse Opposite:
A C T G A G T C A C T G A C G T A C T G A G T C A T C G A C G T
p-value:1e-6
log p-value:-1.490e+01
Information Content per bp:1.924
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif2.05%
Number of Background Sequences with motif502.4
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets99.9 +/- 55.4bp
Average Position of motif in Background97.3 +/- 70.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:ACGCACGC--
TBGCACGCAA
 C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:ACGCACGC-
---CACGCA
 C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Hes1/MA1099.1/Jaspar

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:ACGCACGC---
-GGCACGCGTC
 C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T A C G T
A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:ACGCACGC--
--GCACGTNC
 C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T
A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:ACGCACGC--
--GCACGTAY
 C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T
A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACGCACGC------
AGCGGCACACACGCAA
 A C G T A C G T C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ACGCACGC-
-BGCACGTA
 C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T
A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACGCACGC------
CGAAGCACACAAAATA
 A C G T A C G T C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0095.1_Zfp161_1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACGCACGC------
TGGCGCGCGCGCCTGA
 A C G T A C G T C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A

HIF1A/MA1106.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ACGCACGC--
NNGCACGTNC
 C G T A A T G C A C T G A G T C C G T A A G T C C T A G A G T C A C G T A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C