Motif Name Consensus P-value Log P-value q-value (Benjamini) # of Target Sequences with Motif(of 5924) % of Target Sequences with Motif # of Background Sequences with Motif(of 43542) % of Background Sequences with Motif Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer NNATGASTCATH 1e-497 -1.145e+03 0.0000 2068.0 34.91% 4915.9 11.29% Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer DATGASTCATHN 1e-472 -1.089e+03 0.0000 2225.0 37.56% 5829.7 13.39% BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer DATGASTCAT 1e-469 -1.081e+03 0.0000 2188.0 36.93% 5678.9 13.05% Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer GGATGACTCATC 1e-465 -1.071e+03 0.0000 1853.0 31.28% 4196.2 9.64% JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer RATGASTCAT 1e-457 -1.054e+03 0.0000 1991.0 33.61% 4858.1 11.16% AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer VTGACTCATC 1e-439 -1.013e+03 0.0000 2312.0 39.03% 6537.8 15.02% Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer NATGASTCABNN 1e-414 -9.541e+02 0.0000 1430.0 24.14% 2796.8 6.43% Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer GATGASTCATCN 1e-356 -8.204e+02 0.0000 1101.0 18.59% 1905.5 4.38% Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer TGCTGAGTCA 1e-186 -4.300e+02 0.0000 786.0 13.27% 1726.0 3.97% TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer CYRCATTCCA 1e-109 -2.528e+02 0.0000 2130.0 35.96% 10048.8 23.09% TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer YCWGGAATGY 1e-103 -2.376e+02 0.0000 1599.0 26.99% 6927.3 15.91% TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer TRCATTCCAG 1e-90 -2.078e+02 0.0000 2273.0 38.37% 11465.4 26.34% TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer CCWGGAATGY 1e-90 -2.074e+02 0.0000 1852.0 31.26% 8766.8 20.14% TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer CCWGGAATGY 1e-80 -1.846e+02 0.0000 1247.0 21.05% 5331.2 12.25% Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer HTGCTGAGTCAT 1e-74 -1.708e+02 0.0000 232.0 3.92% 387.2 0.89% Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer AWWNTGCTGAGTCAT 1e-73 -1.695e+02 0.0000 240.0 4.05% 416.4 0.96% NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer GATGACTCAGCA 1e-67 -1.546e+02 0.0000 245.0 4.14% 469.2 1.08% MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer GCTGASTCAGCA 1e-67 -1.545e+02 0.0000 580.0 9.79% 1931.1 4.44% NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer AWWWTGCTGAGTCAT 1e-53 -1.226e+02 0.0000 192.0 3.24% 364.5 0.84% Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer NRYTTCCGGH 1e-49 -1.137e+02 0.0000 2326.0 39.26% 13142.5 30.19% Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer TWGTCTGV 1e-48 -1.125e+02 0.0000 3963.0 66.90% 25044.9 57.54% ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer ACAGGAAGTG 1e-46 -1.080e+02 0.0000 2976.0 50.24% 17810.7 40.92% NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer CYTGGCABNSTGCCAR 1e-45 -1.043e+02 0.0000 1035.0 17.47% 4890.0 11.23% NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer VTTACGTAAYNNNNN 1e-44 -1.027e+02 0.0000 1155.0 19.50% 5642.5 12.96% Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) NNAYTTCCTGHN 1e-42 -9.676e+01 0.0000 1949.0 32.90% 10871.4 24.98% Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer TAATCCCN 1e-41 -9.655e+01 0.0000 4751.0 80.20% 31576.5 72.54% GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer RACCGGAAGT 1e-41 -9.524e+01 0.0000 1904.0 32.14% 10595.7 24.34% c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer ATGACGTCATCY 1e-40 -9.325e+01 0.0000 624.0 10.53% 2605.6 5.99% ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer AACCGGAAGT 1e-40 -9.223e+01 0.0000 2603.0 43.94% 15464.8 35.53% ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer ACAGGAAGTG 1e-40 -9.213e+01 0.0000 2127.0 35.90% 12161.5 27.94% CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer GCTAATCC 1e-38 -8.791e+01 0.0000 3239.0 54.68% 20125.4 46.23% Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer NGRTGACGTCAY 1e-37 -8.587e+01 0.0000 876.0 14.79% 4149.5 9.53% ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer ACCGGAAGTG 1e-37 -8.551e+01 0.0000 2289.0 38.64% 13403.9 30.79% NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer YTGCCAAG 1e-34 -7.874e+01 0.0000 2974.0 50.20% 18399.2 42.27% GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer RGGATTAR 1e-33 -7.819e+01 0.0000 1866.0 31.50% 10649.7 24.47% Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer CTGTCTGG 1e-33 -7.720e+01 0.0000 2637.0 44.51% 16020.0 36.80% Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer NRRTGACGTCAT 1e-32 -7.491e+01 0.0000 645.0 10.89% 2906.6 6.68% EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer ATTTCCTGTN 1e-32 -7.454e+01 0.0000 1458.0 24.61% 7995.5 18.37% Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer ACTTCCKGKT 1e-32 -7.426e+01 0.0000 2004.0 33.83% 11666.1 26.80% SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer ASWTCCTGBT 1e-32 -7.390e+01 0.0000 1919.0 32.39% 11093.6 25.49% MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer WNTGCTGASTCAGCANWTTY 1e-29 -6.832e+01 0.0000 747.0 12.61% 3588.1 8.24% Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer NYTAATCCYB 1e-28 -6.566e+01 0.0000 1345.0 22.70% 7412.8 17.03% Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer HTTTCCCASG 1e-28 -6.540e+01 0.0000 2599.0 43.87% 16020.0 36.80% EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer VACAGGAAAT 1e-28 -6.476e+01 0.0000 1202.0 20.29% 6496.6 14.92% PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer AGAGGAAGTG 1e-27 -6.366e+01 0.0000 1047.0 17.67% 5519.2 12.68% Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer HACTTCCGGY 1e-27 -6.309e+01 0.0000 1311.0 22.13% 7236.3 16.62% Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer NRYTTCCGGY 1e-26 -6.029e+01 0.0000 1302.0 21.98% 7229.5 16.61% Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer GATGACGTCA 1e-26 -6.003e+01 0.0000 1131.0 19.09% 6119.3 14.06% ETS(ETS)/Promoter/Homer AACCGGAAGT 1e-25 -5.957e+01 0.0000 805.0 13.59% 4061.9 9.33% HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer RTTATGYAAB 1e-25 -5.942e+01 0.0000 1332.0 22.48% 7443.3 17.10% RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer AAACCACARM 1e-24 -5.718e+01 0.0000 1675.0 28.27% 9785.3 22.48% NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer WGGGGATTTCCC 1e-24 -5.714e+01 0.0000 1178.0 19.89% 6476.0 14.88% Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer CCWTTGTY 1e-24 -5.599e+01 0.0000 2515.0 42.45% 15657.0 35.97% Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer CCWTTGTYYB 1e-24 -5.549e+01 0.0000 2398.0 40.48% 14840.3 34.09% Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer CTGGCAGSCTGCCA 1e-23 -5.517e+01 0.0000 911.0 15.38% 4793.6 11.01% Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer VBSYGTCTGG 1e-23 -5.408e+01 0.0000 2585.0 43.64% 16206.6 37.23% Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer MACAGGAAGT 1e-23 -5.356e+01 0.0000 634.0 10.70% 3097.9 7.12% JunD(bZIP)/K562-JunD-ChIP-Seq/Homer ATGACGTCATCN 1e-23 -5.319e+01 0.0000 215.0 3.63% 739.0 1.70% EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer AVCAGGAAGT 1e-22 -5.233e+01 0.0000 2340.0 39.50% 14512.2 33.34% MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer TGCTGACTCA 1e-21 -5.047e+01 0.0000 1388.0 23.43% 7997.2 18.37% ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer AVCCGGAAGT 1e-21 -4.958e+01 0.0000 1179.0 19.90% 6628.9 15.23% Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer ATTGCATCAT 1e-21 -4.938e+01 0.0000 436.0 7.36% 1973.8 4.53% MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer RTCATGTGAC 1e-20 -4.831e+01 0.0000 1462.0 24.68% 8542.7 19.63% Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer MTGATGCAAT 1e-20 -4.766e+01 0.0000 532.0 8.98% 2560.5 5.88% Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer CTGTTTAC 1e-20 -4.712e+01 0.0000 2738.0 46.22% 17497.1 40.20% RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer SAAACCACAG 1e-19 -4.482e+01 0.0000 1181.0 19.94% 6740.9 15.49% Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer BCCATTGTTC 1e-19 -4.440e+01 0.0000 1428.0 24.11% 8403.1 19.30% Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer YCATYAATCA 1e-19 -4.433e+01 0.0000 1553.0 26.22% 9253.5 21.26% BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer NHAACBGYYV 1e-19 -4.386e+01 0.0000 2313.0 39.04% 14554.3 33.44% CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer ATTGCGCAAC 1e-18 -4.343e+01 0.0000 1112.0 18.77% 6313.8 14.50% Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer CCATTGTTNY 1e-18 -4.207e+01 0.0000 2310.0 38.99% 14585.4 33.51% AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer TGGCAGTTGG 1e-17 -4.077e+01 0.0000 2344.0 39.57% 14865.9 34.15% Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer CCATTGTTYB 1e-17 -3.977e+01 0.0000 1174.0 19.82% 6805.6 15.63% STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer NYTTCCWGGAAR 1e-17 -3.952e+01 0.0000 1711.0 28.88% 10462.7 24.04% Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer RAACAATGGN 1e-17 -3.924e+01 0.0000 1667.0 28.14% 10166.1 23.36% NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer GGAAATTCCC 1e-16 -3.856e+01 0.0000 184.0 3.11% 680.4 1.56% ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer ANCAGGAAGT 1e-16 -3.769e+01 0.0000 1378.0 23.26% 8229.2 18.91% ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer ACVAGGAAGT 1e-16 -3.744e+01 0.0000 1409.0 23.78% 8446.5 19.40% PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer MGGAAGTGAAAC 1e-15 -3.658e+01 0.0000 2274.0 38.39% 14497.5 33.31% Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer NCYAATAAAA 1e-15 -3.619e+01 0.0000 2353.0 39.72% 15073.0 34.63% KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer DGGGYGKGGC 1e-15 -3.565e+01 0.0000 2483.0 41.91% 16019.4 36.80% RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer NWAACCACADNN 1e-15 -3.556e+01 0.0000 1280.0 21.61% 7619.9 17.51% MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer GGCVGTTR 1e-15 -3.520e+01 0.0000 2637.0 44.51% 17141.4 39.38% Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer NAHCAGCTGD 1e-14 -3.447e+01 0.0000 2124.0 35.85% 13501.8 31.02% RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer GCTGTGGTTW 1e-14 -3.446e+01 0.0000 1155.0 19.50% 6804.1 15.63% HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer TTTTATKRGG 1e-14 -3.336e+01 0.0000 1640.0 27.68% 10146.2 23.31% KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer RGKGGGCGKGGC 1e-14 -3.330e+01 0.0000 2987.0 50.42% 19747.7 45.37% KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer NRGCCCCRCCCHBNN 1e-14 -3.318e+01 0.0000 1163.0 19.63% 6890.4 15.83% Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer RGKGGGCGGAGC 1e-14 -3.301e+01 0.0000 2109.0 35.60% 13442.2 30.88% ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer WDNCTGGGCA 1e-14 -3.295e+01 0.0000 2393.0 40.40% 15465.9 35.53% PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer RTGATTKATRGN 1e-14 -3.280e+01 0.0000 1295.0 21.86% 7793.3 17.90% Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer YCTTTGTTCC 1e-13 -3.220e+01 0.0000 1369.0 23.11% 8314.2 19.10% Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer NNNCTTTCCAGGAAA 1e-13 -3.194e+01 0.0000 2343.0 39.55% 15142.4 34.79% Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer VGCCATAAAA 1e-13 -3.192e+01 0.0000 3177.0 53.63% 21189.6 48.68% Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer ADBTAATTAR 1e-13 -3.158e+01 0.0000 2372.0 40.04% 15362.6 35.29% Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer GGGGGGGG 1e-13 -3.139e+01 0.0000 2630.0 44.40% 17223.6 39.57% KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer MKGGGYGTGGCC 1e-13 -3.125e+01 0.0000 2175.0 36.72% 13969.2 32.09% Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer TAATTAGN 1e-13 -3.124e+01 0.0000 1675.0 28.27% 10453.3 24.01% Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer GKTAATGR 1e-13 -3.085e+01 0.0000 3187.0 53.80% 21302.4 48.94% Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer GGCCATAAATCA 1e-13 -3.012e+01 0.0000 869.0 14.67% 5003.9 11.50% Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer SVYTTCCNGGAARB 1e-13 -3.009e+01 0.0000 1300.0 21.94% 7903.0 18.16% Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer AGGVNCCTTTGT 1e-13 -3.002e+01 0.0000 1377.0 23.24% 8431.0 19.37% CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer DRTGTTGCAA 1e-12 -2.988e+01 0.0000 1177.0 19.87% 7071.8 16.25% FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer NVWTGTTTAC 1e-12 -2.969e+01 0.0000 1570.0 26.50% 9772.9 22.45% Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer CTTCCGGGAA 1e-12 -2.954e+01 0.0000 1010.0 17.05% 5955.2 13.68% Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer GWAAYHTGAKMC 1e-12 -2.946e+01 0.0000 1560.0 26.33% 9710.0 22.31% Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer MAATCACTGC 1e-12 -2.912e+01 0.0000 1065.0 17.98% 6335.9 14.56% ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer TTAACCCTTTVNKKN 1e-12 -2.857e+01 0.0000 495.0 8.36% 2618.6 6.02% Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer CCCCTCCCCCAC 1e-12 -2.810e+01 0.0000 563.0 9.50% 3057.4 7.02% SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer AAAGRGGAAGTG 1e-12 -2.785e+01 0.0000 499.0 8.42% 2656.6 6.10% Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer DCYAAAAATAGM 1e-12 -2.764e+01 0.0000 775.0 13.08% 4441.6 10.20% SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer AVCAGCTG 1e-11 -2.726e+01 0.0000 4885.0 82.46% 34312.4 78.83% BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer GNCACGTG 1e-11 -2.723e+01 0.0000 2369.0 39.99% 15499.0 35.61% TATA-Box(TBP)/Promoter/Homer CCTTTTAWAGSC 1e-11 -2.714e+01 0.0000 2004.0 33.83% 12900.9 29.64% FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer WWTRTAAACAVG 1e-11 -2.711e+01 0.0000 1280.0 21.61% 7852.9 18.04% HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer TGCCAGCB 1e-11 -2.697e+01 0.0000 3203.0 54.07% 21569.6 49.55% CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer CCATATATGGNM 1e-11 -2.633e+01 0.0000 552.0 9.32% 3021.1 6.94% PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer VAGRACAKNCTGTBC 1e-11 -2.607e+01 0.0000 2900.0 48.95% 19385.5 44.54% IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer GRAASTGAAAST 1e-11 -2.550e+01 0.0000 646.0 10.90% 3645.9 8.38% Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer CYHATAAAAN 1e-10 -2.521e+01 0.0000 3193.0 53.90% 21567.4 49.55% Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer TTTTATGGCM 1e-10 -2.476e+01 0.0000 3030.0 51.15% 20389.4 46.84% CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer NGYCATAAAWCH 1e-10 -2.471e+01 0.0000 1371.0 23.14% 8553.1 19.65% Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer GCTATTTTTGGM 1e-10 -2.466e+01 0.0000 1325.0 22.37% 8237.5 18.92% Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer CTAATKGV 1e-10 -2.448e+01 0.0000 2637.0 44.51% 17538.1 40.29% ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer AGGCCTAG 1e-10 -2.434e+01 0.0000 3132.0 52.87% 21155.4 48.60% OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer ATGCATWATGCATRW 1e-10 -2.418e+01 0.0000 1122.0 18.94% 6860.2 15.76% ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer AGGCCTRG 1e-10 -2.415e+01 0.0000 2480.0 41.86% 16417.4 37.72% Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer TGTTKCCTAGCAACM 1e-10 -2.414e+01 0.0000 1871.0 31.58% 12069.7 27.73% FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer TRTTTACTTW 1e-10 -2.355e+01 0.0000 1500.0 25.32% 9487.9 21.80% Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer DGTAAACA 1e-9 -2.273e+01 0.0000 1129.0 19.06% 6952.8 15.97% ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer RCAGGATGTGGT 1e-9 -2.249e+01 0.0000 243.0 4.10% 1166.3 2.68% Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer RGCAATNAAA 1e-9 -2.249e+01 0.0000 3384.0 57.12% 23093.9 53.05% NFY(CCAAT)/Promoter/Homer RGCCAATSRG 1e-9 -2.245e+01 0.0000 1281.0 21.62% 8006.9 18.39% EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer NWGGGTGTGGCY 1e-9 -2.230e+01 0.0000 425.0 7.17% 2290.6 5.26% Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer SCCTAGCAACAG 1e-9 -2.179e+01 0.0000 541.0 9.13% 3044.6 6.99% Sp1(Zf)/Promoter/Homer GGCCCCGCCCCC 1e-9 -2.167e+01 0.0000 789.0 13.32% 4682.2 10.76% Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer HDGYAATGAAAN 1e-9 -2.146e+01 0.0000 2465.0 41.61% 16422.1 37.73% Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer NNYTAATTAR 1e-9 -2.141e+01 0.0000 1733.0 29.25% 11199.7 25.73% THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer TRAGGTCA 1e-9 -2.124e+01 0.0000 4521.0 76.32% 31707.2 72.84% IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer ACTGAAACCA 1e-8 -2.070e+01 0.0000 727.0 12.27% 4294.7 9.87% Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer CYTGTTTACWYW 1e-8 -2.070e+01 0.0000 1191.0 20.10% 7444.4 17.10% GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATAASR 1e-8 -2.041e+01 0.0000 2081.0 35.13% 13710.5 31.50% Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer NAACAGCTGG 1e-8 -2.040e+01 0.0000 1712.0 28.90% 11091.7 25.48% FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WAAGTAAACA 1e-8 -2.013e+01 0.0000 1682.0 28.39% 10890.4 25.02% GFY(?)/Promoter/Homer ACTACAATTCCC 1e-8 -2.007e+01 0.0000 173.0 2.92% 786.1 1.81% PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer GGAAGTGAAAST 1e-8 -2.001e+01 0.0000 397.0 6.70% 2156.7 4.95% PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer ACCRTGACTAATTNN 1e-8 -1.981e+01 0.0000 347.0 5.86% 1844.4 4.24% MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer HWWGTCAGCAWWTTT 1e-8 -1.938e+01 0.0000 481.0 8.12% 2708.6 6.22% Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer SSCMATWAAA 1e-8 -1.901e+01 0.0000 1046.0 17.66% 6504.0 14.94% Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer WWATRTAAACAN 1e-8 -1.899e+01 0.0000 1327.0 22.40% 8447.5 19.41% Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer TGATTRATGGCY 1e-8 -1.879e+01 0.0000 338.0 5.71% 1806.5 4.15% Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer YGGCCCCGCCCC 1e-8 -1.860e+01 0.0000 2746.0 46.35% 18590.2 42.71% GFY-Staf(?,Zf)/Promoter/Homer RACTACAATTCCCAGAAKGC 1e-8 -1.855e+01 0.0000 133.0 2.25% 575.7 1.32% WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer MCTCCCMCRCAB 1e-7 -1.832e+01 0.0000 1329.0 22.43% 8486.0 19.50% Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer HAWGRGGCCM 1e-7 -1.815e+01 0.0000 3931.0 66.36% 27370.4 62.88% Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer GGCMATGAAA 1e-7 -1.815e+01 0.0000 1744.0 29.44% 11410.3 26.21% RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer TTGAMCTTTG 1e-7 -1.811e+01 0.0000 3564.0 60.16% 24631.8 56.59% NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer ATTTTCCATT 1e-7 -1.787e+01 0.0000 1517.0 25.61% 9820.2 22.56% Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer GCCACACCCA 1e-7 -1.779e+01 0.0000 804.0 13.57% 4895.0 11.25% RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer AAWCTAGGTCARDNN 1e-7 -1.753e+01 0.0000 249.0 4.20% 1275.0 2.93% EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer NRBCARRGGTCA 1e-7 -1.745e+01 0.0000 2076.0 35.04% 13806.2 31.72% Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer NNNVCTGWGYAAACASN 1e-7 -1.740e+01 0.0000 1391.0 23.48% 8955.1 20.57% STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer TTCCKNAGAA 1e-7 -1.737e+01 0.0000 1024.0 17.29% 6409.9 14.73% bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer NAGTTTCABTHTGACTNW 1e-7 -1.701e+01 0.0000 697.0 11.77% 4196.6 9.64% IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer GAAASYGAAASY 1e-7 -1.688e+01 0.0000 222.0 3.75% 1119.5 2.57% NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer NVCACGTG 1e-7 -1.678e+01 0.0000 2093.0 35.33% 13959.0 32.07% Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer AAGCACTTAA 1e-7 -1.646e+01 0.0000 3049.0 51.47% 20912.5 48.04% Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer RGCCATTAAC 1e-7 -1.644e+01 0.0000 4513.0 76.18% 31855.7 73.18% PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer YCCDNTCCAGGTTTT 1e-7 -1.638e+01 0.0000 1801.0 30.40% 11893.1 27.32% FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer SCHTGTTTACAT 1e-7 -1.630e+01 0.0000 981.0 16.56% 6152.0 14.13% RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer WAABTAGGTCAV 1e-7 -1.622e+01 0.0000 167.0 2.82% 798.3 1.83% Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer NNTGTGGATTSS 1e-6 -1.600e+01 0.0000 955.0 16.12% 5983.6 13.75% Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer NBWGATAAGR 1e-6 -1.597e+01 0.0000 1470.0 24.81% 9569.1 21.98% ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer TGGGGAAGGGCM 1e-6 -1.585e+01 0.0000 1877.0 31.68% 12459.5 28.62% STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer ABTTCYYRRGAA 1e-6 -1.582e+01 0.0000 1012.0 17.08% 6382.7 14.66% Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer CYAAAAATAG 1e-6 -1.528e+01 0.0000 714.0 12.05% 4363.7 10.02% FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer NYYTGTTTACHN 1e-6 -1.522e+01 0.0000 665.0 11.23% 4034.1 9.27% Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer RACTACAACTCCCAGVAKGC 1e-6 -1.517e+01 0.0000 93.0 1.57% 386.3 0.89% RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer AAYTAGGTCA 1e-6 -1.512e+01 0.0000 217.0 3.66% 1116.8 2.57% RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer AAYTAGGTCA 1e-6 -1.512e+01 0.0000 217.0 3.66% 1116.8 2.57% COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer GKBCARAGGTCA 1e-6 -1.506e+01 0.0000 2211.0 37.32% 14892.4 34.21% Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer TGCGTGGGYG 1e-6 -1.503e+01 0.0000 1437.0 24.26% 9378.1 21.54% AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer CCAGGAACAG 1e-6 -1.502e+01 0.0000 4348.0 73.40% 30669.5 70.46% X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer GGTTGCCATGGCAA 1e-6 -1.499e+01 0.0000 216.0 3.65% 1112.9 2.56% Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer TGTCANYT 1e-6 -1.487e+01 0.0000 3868.0 65.29% 27064.4 62.18% EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer NABTCCCWDGGGAVH 1e-6 -1.461e+01 0.0000 1863.0 31.45% 12419.6 28.53% Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer KGTTGCCATGGCAA 1e-6 -1.448e+01 0.0000 389.0 6.57% 2222.4 5.11% PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer ACTTTCACTTTC 1e-6 -1.441e+01 0.0000 966.0 16.31% 6117.5 14.05% CRE(bZIP)/Promoter/Homer CSGTGACGTCAC 1e-6 -1.414e+01 0.0000 387.0 6.53% 2217.7 5.09% PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GCAGCCAAGCRTGACH 1e-6 -1.398e+01 0.0000 682.0 11.51% 4189.0 9.62% Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGMATATDC 1e-6 -1.389e+01 0.0000 1410.0 23.80% 9239.5 21.23% COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer AGRGGTCA 1e-6 -1.388e+01 0.0000 2536.0 42.81% 17306.3 39.76% GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer CTCCCTGGGAGGCCN 1e-5 -1.372e+01 0.0000 2664.0 44.97% 18246.8 41.92% MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer AACAGCTG 1e-5 -1.364e+01 0.0000 1813.0 30.60% 12111.1 27.82% Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer GCTATTTTTAGC 1e-5 -1.363e+01 0.0000 337.0 5.69% 1904.5 4.38% Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer GGYAATGAAA 1e-5 -1.352e+01 0.0000 950.0 16.04% 6041.8 13.88% MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer RRCAGCTGYTSY 1e-5 -1.346e+01 0.0000 1407.0 23.75% 9238.5 21.22% Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer RCCATMTGTT 1e-5 -1.336e+01 0.0000 2732.0 46.12% 18762.3 43.10% NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer SARTGGAAAAWRTGAGTCAB 1e-5 -1.300e+01 0.0000 328.0 5.54% 1860.8 4.27% Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer AAGGTGTKAA 1e-5 -1.297e+01 0.0000 1986.0 33.52% 13385.9 30.75% FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer WAAGTAAACA 1e-5 -1.290e+01 0.0000 1384.0 23.36% 9102.7 20.91% AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer SCCTSAGGSCAW 1e-5 -1.262e+01 0.0000 2276.0 38.42% 15493.2 35.59% PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer TGGTACATTCCA 1e-5 -1.248e+01 0.0000 1025.0 17.30% 6604.9 15.17% STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer RTTTCTNAGAAA 1e-5 -1.230e+01 0.0000 631.0 10.65% 3898.5 8.96% Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer TBGCACGCAA 1e-5 -1.228e+01 0.0000 1010.0 17.05% 6508.1 14.95% Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer RSCACTYRAG 1e-5 -1.199e+01 0.0000 3598.0 60.74% 25217.7 57.93% TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer SMCATCTGKH 1e-5 -1.196e+01 0.0000 2311.0 39.01% 15785.9 36.27% Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer BAACAGCTGT 1e-5 -1.173e+01 0.0000 1201.0 20.27% 7869.2 18.08% PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer VNAGGKCAAAGGTCA 1e-5 -1.167e+01 0.0000 1779.0 30.03% 11973.8 27.51% Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer TTRAGTGSYK 1e-5 -1.160e+01 0.0000 2784.0 47.00% 19247.0 44.22% ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer ATTTCCCAGVAKSCY 1e-5 -1.158e+01 0.0000 646.0 10.90% 4025.8 9.25% Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer YCTTATCTBN 1e-4 -1.131e+01 0.0000 1321.0 22.30% 8735.3 20.07% NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer WNTGTTTRYTTTGGCA 1e-4 -1.122e+01 0.0000 112.0 1.89% 538.5 1.24% NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer GGGGGAATCCCC 1e-4 -1.117e+01 0.0000 315.0 5.32% 1819.5 4.18% Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer GTCATGCHTGRCTGS 1e-4 -1.108e+01 0.0000 611.0 10.31% 3804.7 8.74% NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer ACCATCTGTT 1e-4 -1.104e+01 0.0000 2322.0 39.20% 15920.4 36.57% AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer ATGCCCTGAGGC 1e-4 -1.084e+01 0.0000 1846.0 31.16% 12500.8 28.72% YY1(Zf)/Promoter/Homer CAAGATGGCGGC 1e-4 -1.061e+01 0.0000 150.0 2.53% 777.4 1.79% ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer AGTTTCASTTTC 1e-4 -1.059e+01 0.0000 132.0 2.23% 667.4 1.53% Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer GYMATAAAAH 1e-4 -1.051e+01 0.0001 1052.0 17.76% 6881.8 15.81% Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer GTCACGTGGT 1e-4 -1.037e+01 0.0001 456.0 7.70% 2778.6 6.38% TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer GTCACGTGACYV 1e-4 -1.037e+01 0.0001 127.0 2.14% 640.8 1.47% Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer RTCACSCCAY 1e-4 -1.024e+01 0.0001 363.0 6.13% 2160.6 4.96% Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer TYTGACCASWRG 1e-4 -1.024e+01 0.0001 1172.0 19.78% 7738.5 17.78% ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer CTGCCWVCTTTTRTA 1e-4 -1.008e+01 0.0001 802.0 13.54% 5157.5 11.85% Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer NDGTAATTAC 1e-4 -1.001e+01 0.0001 1080.0 18.23% 7102.1 16.32% n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer VRCCACGTGG 1e-4 -9.927e+00 0.0001 1079.0 18.21% 7099.6 16.31% IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer AGTTTCAKTTTC 1e-4 -9.797e+00 0.0001 575.0 9.71% 3605.8 8.28% CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer NTNATGCAAYMNNHTGMAAY 1e-4 -9.774e+00 0.0001 244.0 4.12% 1390.5 3.19% IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer GAAAGTGAAAGT 1e-4 -9.763e+00 0.0001 269.0 4.54% 1553.3 3.57% Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer VCAGCTGYTG 1e-4 -9.691e+00 0.0001 1712.0 28.90% 11608.6 26.67% Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer RRSCACTYAA 1e-4 -9.623e+00 0.0001 2982.0 50.34% 20827.8 47.85% Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer YTGWCADY 1e-4 -9.617e+00 0.0001 3605.0 60.85% 25423.6 58.41% RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer CGGTTGCCATGGCAAC 1e-4 -9.551e+00 0.0001 168.0 2.84% 908.4 2.09% KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer GGGGGTGTGTCC 1e-4 -9.520e+00 0.0001 1027.0 17.34% 6754.8 15.52% OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATWATTCATGA 1e-4 -9.341e+00 0.0002 41.0 0.69% 156.3 0.36% PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer TGACCTTTGCCCCA 1e-4 -9.278e+00 0.0002 1661.0 28.04% 11268.9 25.89% PSE(SNAPc)/K562-mStart-Seq/Homer WAVTCACCMTAASYDAAAAG 1e-3 -9.208e+00 0.0002 775.0 13.08% 5008.4 11.51% Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer GCCACRCCCACY 1e-3 -9.044e+00 0.0002 842.0 14.21% 5482.4 12.59% Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer GTTGCCATGGCAACM 1e-3 -8.913e+00 0.0002 183.0 3.09% 1016.0 2.33% Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer BTBRAGTGSN 1e-3 -8.679e+00 0.0003 2772.0 46.79% 19356.9 44.47% RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer TAGGGCAAAGGTCA 1e-3 -8.674e+00 0.0003 1962.0 33.12% 13471.1 30.95% USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer SGTCACGTGR 1e-3 -8.660e+00 0.0003 713.0 12.04% 4602.5 10.57% MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer TTCAAAWTAAAAGTC 1e-3 -8.464e+00 0.0004 438.0 7.39% 2720.1 6.25% Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer VNRVCAGCTGGY 1e-3 -8.373e+00 0.0004 1809.0 30.54% 12389.0 28.46% GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer VAGRACAKWCTGTYC 1e-3 -8.330e+00 0.0004 354.0 5.98% 2157.2 4.96% STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer NATTTCCNGGAAAT 1e-3 -8.308e+00 0.0004 536.0 9.05% 3395.4 7.80% Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer BBCTTATCTS 1e-3 -8.182e+00 0.0005 929.0 15.68% 6134.5 14.09% LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer CCTTTGATST 1e-3 -8.112e+00 0.0005 1048.0 17.69% 6976.4 16.03% Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer CVGTSCTCCC 1e-3 -8.033e+00 0.0005 2984.0 50.37% 20958.6 48.15% Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer GGGGCTYGKCTGGGA 1e-3 -7.870e+00 0.0006 579.0 9.77% 3709.5 8.52% PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer AAGAACATWHTGTTC 1e-3 -7.850e+00 0.0006 341.0 5.76% 2085.5 4.79% GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer AAACYKGTTWDACMRGTTTB 1e-3 -7.760e+00 0.0007 521.0 8.79% 3314.8 7.62% ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer TGGAACAGMA 1e-3 -7.642e+00 0.0008 1393.0 23.51% 9455.1 21.72% MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer DGCACACGTG 1e-3 -7.627e+00 0.0008 1350.0 22.79% 9149.9 21.02% Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer GKVTCADRTTWC 1e-3 -7.610e+00 0.0008 387.0 6.53% 2404.6 5.52% GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NNNNNBAGATAWYATCTVHN 1e-3 -7.306e+00 0.0011 231.0 3.90% 1368.0 3.14% Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer TGACANARRCCAGRC 1e-3 -7.121e+00 0.0013 798.0 13.47% 5270.9 12.11% Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer AGGTGTCA 1e-3 -7.022e+00 0.0014 3875.0 65.41% 27621.9 63.46% E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer GGCGGGAAAH 1e-2 -6.793e+00 0.0018 948.0 16.00% 6345.5 14.58% EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer GTCCCCWGGGGA 1e-2 -6.765e+00 0.0018 2161.0 36.48% 15052.8 34.58% Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer TGWAAYCTGABACCB 1e-2 -6.719e+00 0.0019 100.0 1.69% 533.5 1.23% Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer ATGCATAATTCA 1e-2 -6.404e+00 0.0026 548.0 9.25% 3560.6 8.18% Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer NTAATBNAATTA 1e-2 -6.389e+00 0.0026 980.0 16.54% 6596.7 15.15% HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer TWVGGTCCGC 1e-2 -6.206e+00 0.0032 761.0 12.85% 5060.9 11.63% Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer CACAGCAGGGGG 1e-2 -6.154e+00 0.0033 1094.0 18.47% 7421.7 17.05% E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer BTKGGCGGGAAA 1e-2 -6.094e+00 0.0035 1276.0 21.54% 8724.9 20.04% Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer CAAAGGTCAG 1e-2 -5.981e+00 0.0039 2980.0 50.30% 21100.2 48.47% Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer YTAATTRAWWCCAGATGT 1e-2 -5.923e+00 0.0041 308.0 5.20% 1928.6 4.43% IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer CTTTCANTATGACTV 1e-2 -5.878e+00 0.0043 199.0 3.36% 1195.9 2.75% CHR(?)/Hela-CellCycle-Expression/Homer SRGTTTCAAA 1e-2 -5.553e+00 0.0059 1037.0 17.51% 7056.3 16.21% Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer VGCTGWCAVB 1e-2 -5.438e+00 0.0066 2285.0 38.57% 16069.0 36.92% Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer RCCACGTGGYYN 1e-2 -5.301e+00 0.0076 932.0 15.73% 6326.6 14.53% Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer NNVVCAGCTGBN 1e-2 -5.273e+00 0.0077 2498.0 42.17% 17637.7 40.52% c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer VVCCACGTGG 1e-2 -5.224e+00 0.0081 741.0 12.51% 4977.9 11.44% EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer DGTCCCYRGGGA 1e-2 -5.121e+00 0.0090 500.0 8.44% 3289.0 7.56% HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer RTACGTGC 1e-2 -5.076e+00 0.0093 1571.0 26.52% 10924.1 25.10% ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer ARGAGGMCAAAATGW 1e-2 -5.051e+00 0.0095 247.0 4.17% 1545.0 3.55% bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer KCACGTGMCN 1e-2 -5.044e+00 0.0096 1658.0 27.99% 11555.1 26.55% Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer ACAGCTGTTN 1e-2 -4.974e+00 0.0102 3528.0 59.55% 25233.8 57.97% Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer SAGATAAGRV 1e-2 -4.954e+00 0.0104 811.0 13.69% 5490.2 12.61% ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer GAGSCCGAGC 1e-2 -4.801e+00 0.0121 519.0 8.76% 3439.1 7.90% THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer GGTCANYTGAGGWCA 1e-1 -4.591e+00 0.0148 733.0 12.37% 4961.9 11.40% E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer GGCGGGAARN 1e-1 -4.562e+00 0.0152 1136.0 19.18% 7838.8 18.01% NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer GCCATCTGTT 1e-1 -4.513e+00 0.0159 1335.0 22.54% 9272.9 21.30% Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer CCATTGTATGCAAAT 1e-1 -4.490e+00 0.0162 204.0 3.44% 1273.1 2.92% Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAW 1e-1 -4.490e+00 0.0162 651.0 10.99% 4387.0 10.08% NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer KCCACGTGAC 1e-1 -4.471e+00 0.0164 1503.0 25.37% 10487.9 24.09% p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer NNDRCATGYCYNRRCATGYH 1e-1 -4.469e+00 0.0164 483.0 8.15% 3205.7 7.36% Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer GTRGGTCASTGGGTCA 1e-1 -4.391e+00 0.0177 247.0 4.17% 1570.9 3.61% Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer ASWTCAAAGG 1e-1 -4.367e+00 0.0180 398.0 6.72% 2616.6 6.01% GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer NAGATWNBNATCTNN 1e-1 -4.339e+00 0.0185 122.0 2.06% 727.6 1.67% ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer NGNTCTAGAACCNGV 1e-1 -4.275e+00 0.0197 639.0 10.79% 4316.3 9.92% Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer ATTAACACCT 1e-1 -4.226e+00 0.0206 2766.0 46.69% 19707.0 45.27% ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer RGRACASNSTGTYCYB 1e-1 -4.129e+00 0.0226 366.0 6.18% 2405.7 5.53% Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer ANTTMRCASBNNNGTGYKAAN 1e-1 -4.009e+00 0.0254 377.0 6.36% 2488.5 5.72% p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer NRRRCAWGTCCDGRCATGYY 1e-1 -3.973e+00 0.0262 67.0 1.13% 376.3 0.86% p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer RRCATGYCYRGRCATGYYYN 1e-1 -3.948e+00 0.0267 125.0 2.11% 758.9 1.74% p53(p53)/Saos-p53-ChIP-Seq/Homer RRCATGYCYRGRCATGYYYN 1e-1 -3.948e+00 0.0267 125.0 2.11% 758.9 1.74% HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer GTTAATNATTAA 1e-1 -3.900e+00 0.0279 250.0 4.22% 1611.7 3.70% ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer AACATCTGGA 1e-1 -3.882e+00 0.0283 797.0 13.45% 5467.5 12.56% Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer ATGAATATTC 1e-1 -3.882e+00 0.0283 159.0 2.68% 989.4 2.27% LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer RGGTTACTANAGGTCA 1e-1 -3.846e+00 0.0292 80.0 1.35% 463.9 1.07% Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer BSNTGTTTACWYWGN 1e-1 -3.845e+00 0.0292 452.0 7.63% 3023.2 6.95% CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer GHCACGTG 1e-1 -3.838e+00 0.0292 764.0 12.90% 5235.6 12.03% Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer YTAATYNRATTA 1e-1 -3.822e+00 0.0296 622.0 10.50% 4226.6 9.71% Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer WATGCAAATGAG 1e-1 -3.822e+00 0.0296 577.0 9.74% 3907.9 8.98% PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer GTCACGCTCSCTGM 1e-1 -3.743e+00 0.0318 173.0 2.92% 1089.7 2.50% THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer GGTCACCTGAGGTCA 1e-1 -3.712e+00 0.0327 1076.0 18.16% 7480.5 17.19% Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer TTAATTNAATTA 1e-1 -3.544e+00 0.0386 333.0 5.62% 2205.2 5.07% E-box(bHLH)/Promoter/Homer SSGGTCACGTGA 1e-1 -3.494e+00 0.0404 142.0 2.40% 887.9 2.04% ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer YTKGATAHAGTATTCTWGGTNGGCA 1e-1 -3.441e+00 0.0425 132.0 2.23% 821.6 1.89% Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer AAACMATTAN 1e-1 -3.386e+00 0.0448 752.0 12.69% 5185.5 11.91% E2F(E2F)/Hela-CellCycle-Expression/Homer TTSGCGCGAAAA 1e-1 -3.368e+00 0.0454 121.0 2.04% 749.5 1.72% ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer RGGGCACTAACY 1e-1 -3.286e+00 0.0491 1062.0 17.93% 7419.6 17.05% HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer GCACGTACCC 1e-1 -3.262e+00 0.0502 574.0 9.69% 3925.7 9.02% GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer CRGCTGBNGNSNNSAGATAA 1e-1 -3.007e+00 0.0646 172.0 2.90% 1111.6 2.55% CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer TATCGATNAN 1e-1 -2.851e+00 0.0752 920.0 15.53% 6440.0 14.79% PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer RGGTCTCTAACY 1e-1 -2.699e+00 0.0873 455.0 7.68% 3120.4 7.17% NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer CTGCGCATGCGC 1e-1 -2.686e+00 0.0882 278.0 4.69% 1867.6 4.29% Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer NTAATTDGCYAATTANNWWD 1e-1 -2.678e+00 0.0886 49.0 0.83% 287.2 0.66% ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer GAGCCTGGTACTGWGCCTGR 1e-1 -2.570e+00 0.0984 555.0 9.37% 3844.5 8.83% p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer ACATGCCCGGGCAT 1e-1 -2.566e+00 0.0985 37.0 0.62% 211.8 0.49% HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer TTCTAGAABNTTCTA 1e-1 -2.503e+00 0.1046 353.0 5.96% 2409.2 5.53% DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer BCWGATTCAATCAAN 1e-1 -2.486e+00 0.1061 6.0 0.10% 22.7 0.05% ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer GARTGGTCATCGCCC 1e-1 -2.429e+00 0.1119 147.0 2.48% 964.0 2.21% Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer NGCGTGGGCGGR 1e-1 -2.423e+00 0.1123 366.0 6.18% 2507.9 5.76% HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer TGATKGATGR 1e-1 -2.410e+00 0.1133 358.0 6.04% 2451.4 5.63% HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer BSTTCTRGAABVTTCYAGAA 1e-1 -2.404e+00 0.1137 244.0 4.12% 1644.6 3.78% Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer CCTGCTGAGH 1e-1 -2.351e+00 0.1195 1379.0 23.28% 9819.7 22.56% Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer CTTTGATGTGSB 1e0 -2.297e+00 0.1257 490.0 8.27% 3402.0 7.82% Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer NRAACCRGTTYRAACCRGYT 1e0 -2.283e+00 0.1272 222.0 3.75% 1496.9 3.44% DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer TWGHWACAWTGTWDC 1e0 -2.281e+00 0.1272 300.0 5.06% 2048.4 4.71% ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer GGVTCTCGCGAGAAC 1e0 -2.274e+00 0.1276 92.0 1.55% 589.0 1.35% HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer CARRGKBCAAAGTYCA 1e0 -2.268e+00 0.1279 708.0 11.95% 4971.3 11.42% GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer NRGVACABNVTGTYCY 1e0 -2.185e+00 0.1386 187.0 3.16% 1255.5 2.88% E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer VDTTTCCCGCCA 1e0 -2.137e+00 0.1450 272.0 4.59% 1859.5 4.27% ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer SMCAGTCWGAKGGAGGAGGC 1e0 -2.134e+00 0.1450 158.0 2.67% 1054.3 2.42% Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer ATATGCAAAT 1e0 -2.048e+00 0.1575 408.0 6.89% 2836.1 6.52% EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer GGYAGCAYDTGCTDCCCNNN 1e0 -1.951e+00 0.1730 30.0 0.51% 178.1 0.41% GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATGKDGAGATAAG 1e0 -1.947e+00 0.1732 110.0 1.86% 727.2 1.67% PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer NGTGTTCAVTSAAGCGKAAA 1e0 -1.925e+00 0.1766 124.0 2.09% 826.6 1.90% Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer CGGTCACSCCAC 1e0 -1.907e+00 0.1793 220.0 3.71% 1505.5 3.46% LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer AAGACCCYYN 1e0 -1.845e+00 0.1902 2646.0 44.67% 19157.3 44.01% ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer GTCWGCTGTYYCTCT 1e0 -1.687e+00 0.2221 123.0 2.08% 831.3 1.91% DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer YDGHTACAWTGTADC 1e0 -1.681e+00 0.2228 231.0 3.90% 1599.6 3.67% NRF(NRF)/Promoter/Homer STGCGCATGCGC 1e0 -1.666e+00 0.2254 299.0 5.05% 2087.9 4.80% Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer TATGCWAATBAV 1e0 -1.590e+00 0.2427 402.0 6.79% 2835.0 6.51% Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer TGACCTTTNCNT 1e0 -1.570e+00 0.2467 259.0 4.37% 1809.0 4.16% Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer GGTGYTGACAGS 1e0 -1.542e+00 0.2532 326.0 5.50% 2292.7 5.27% GFX(?)/Promoter/Homer ATTCTCGCGAGA 1e0 -1.465e+00 0.2727 24.0 0.41% 150.0 0.34% Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer AGGTGHCAGACA 1e0 -1.464e+00 0.2727 260.0 4.39% 1824.0 4.19% ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer VAGGTCACNSTGACC 1e0 -1.408e+00 0.2868 381.0 6.43% 2702.3 6.21% CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer AYAGTGCCMYCTRGTGGCCA 1e0 -1.386e+00 0.2924 215.0 3.63% 1507.8 3.46% GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer AGATSTNDNNDSAGATAASN 1e0 -1.385e+00 0.2924 96.0 1.62% 656.5 1.51% Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer ACTYKNATTCGTGNTACTTC 1e0 -1.364e+00 0.2973 95.0 1.60% 650.7 1.49% ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer GRTGMTRGAGCC 1e0 -1.363e+00 0.2973 936.0 15.80% 6740.8 15.49% TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer ACWTCAAAGG 1e0 -1.346e+00 0.3009 112.0 1.89% 772.8 1.78% DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer NWTAAYCYAATCAWN 1e0 -1.328e+00 0.3056 62.0 1.05% 418.1 0.96% ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer AGGAARCAGCTG 1e0 -1.321e+00 0.3069 154.0 2.60% 1074.1 2.47% bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer KCACGTGMCN 1e0 -1.306e+00 0.3108 425.0 7.17% 3032.3 6.97% ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer GNCTGTASTRNTGBCTCHTT 1e0 -1.285e+00 0.3163 35.0 0.59% 230.5 0.53% Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCHGATTAC 1e0 -1.228e+00 0.3342 38.0 0.64% 253.9 0.58% RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer GGGRAARRGRMCAGMTG 1e0 -1.221e+00 0.3356 587.0 9.91% 4220.9 9.70% BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer CNNBRGCGCCCCCTGSTGGC 1e0 -1.173e+00 0.3511 443.0 7.48% 3179.6 7.30% ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer AGAAATGACTTCCCT 1e0 -1.167e+00 0.3521 12.0 0.20% 74.2 0.17% T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer ACTTTCGTTTCT 1e0 -1.098e+00 0.3764 19.0 0.32% 124.9 0.29% ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer GGGTTTTGAAGGATGARTAGGAGTT 1e0 -1.095e+00 0.3764 3.0 0.05% 16.0 0.04% Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer GGTTAAWCATTAA 1e0 -1.077e+00 0.3823 206.0 3.48% 1469.2 3.38% c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer VCCACGTG 1e0 -1.068e+00 0.3846 718.0 12.12% 5199.7 11.95% Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer GGCCYCCTGCTGDGH 1e0 -1.036e+00 0.3961 1203.0 20.31% 8752.9 20.11% ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer AAGGKGRCGCAGGCA 1e0 -1.002e+00 0.4086 325.0 5.49% 2342.6 5.38% ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer CCTCATGGTGYCYTWYTCCCTTGTG 1e0 -9.898e-01 0.4125 36.0 0.61% 248.9 0.57% E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer CWGGCGGGAA 1e0 -9.737e-01 0.4181 515.0 8.69% 3732.6 8.58% HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer GYCATCMATCAT 1e0 -9.364e-01 0.4328 133.0 2.25% 952.5 2.19% Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer TAATCAATTA 1e0 -8.640e-01 0.4640 146.0 2.46% 1053.4 2.42% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer RGGTCADNNAGAGGTCAV 1e0 -8.281e-01 0.4798 47.0 0.79% 335.4 0.77% ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer GTGGGCCCCA 1e0 -8.107e-01 0.4869 342.0 5.77% 2492.5 5.73% Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer VCAKCTGGNNNCCAGMTGBN 1e0 -7.695e-01 0.5060 195.0 3.29% 1421.8 3.27% TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer GAGGTCAAAGGTCA 1e0 -7.416e-01 0.5189 173.0 2.92% 1263.1 2.90% PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer GSCTGTCACTCA 1e0 -7.334e-01 0.5219 107.0 1.81% 780.6 1.79% FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer AGGTCANTGACCTB 1e0 -6.418e-01 0.5704 650.0 10.97% 4785.3 10.99% Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer BTCAAGGTCA 1e0 -6.294e-01 0.5760 754.0 12.73% 5553.7 12.76% Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer AGGTGTGAAA 1e0 -6.176e-01 0.5814 1359.0 22.94% 10006.0 22.99% Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer AGGTGTGAAM 1e0 -5.322e-01 0.6316 1392.0 23.50% 10278.8 23.61% Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer SCTGTCAMTCAN 1e0 -5.321e-01 0.6316 320.0 5.40% 2377.3 5.46% VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer ARAGGTCANWGAGTTCANNN 1e0 -4.970e-01 0.6508 315.0 5.32% 2347.3 5.39% GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer CGTGGGTGGTCC 1e0 -4.764e-01 0.6626 215.0 3.63% 1610.6 3.70% HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer VCAGCTGBNN 1e0 -4.481e-01 0.6799 2773.0 46.81% 20472.6 47.03% HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer NTATYGATCH 1e0 -4.312e-01 0.6897 715.0 12.07% 5322.0 12.23% Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer BTCAAGGTCA 1e0 -3.969e-01 0.7120 985.0 16.63% 7329.4 16.84% FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer AGTAAACAAAAAAGAACAND 1e0 -3.848e-01 0.7188 70.0 1.18% 541.9 1.24% RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer AGGTCAAGGTCA 1e0 -3.740e-01 0.7247 163.0 2.75% 1241.3 2.85% OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer ATGAATATTCATGAG 1e0 -3.697e-01 0.7260 10.0 0.17% 83.0 0.19% Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer DAGGTGTBAA 1e0 -3.626e-01 0.7293 1511.0 25.51% 11227.0 25.79% E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer DNRCAGCTGY 1e0 -3.131e-01 0.7644 2246.0 37.91% 16669.6 38.30% OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer ATTTGCATAACAATG 1e0 -3.105e-01 0.7645 246.0 4.15% 1876.8 4.31% PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer ADGGYAGYAGCATCT 1e0 -2.854e-01 0.7819 619.0 10.45% 4664.3 10.72% SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer CAAGGHCANV 1e0 -2.095e-01 0.8415 596.0 10.06% 4528.3 10.40% HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer TACGTGCV 1e0 -1.623e-01 0.8799 362.0 6.11% 2800.8 6.43% ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer MACCTTCYATGGCTCCCTAKTGCCY 1e0 -1.257e-01 0.9105 14.0 0.24% 136.3 0.31% Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer SCTGTCAVTCAV 1e0 -1.203e-01 0.9131 309.0 5.22% 2423.5 5.57% Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer HNRAATCAAT 1e0 -1.122e-01 0.9182 567.0 9.57% 4374.0 10.05% CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer TGCAGTTCCMVNWRTGGCCA 1e0 -1.019e-01 0.9254 16.0 0.27% 157.5 0.36% RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer AGGTCAAGGTCA 1e0 -1.014e-01 0.9254 35.0 0.59% 316.0 0.73% SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer GCAACAGGTG 1e0 -9.833e-02 0.9254 405.0 6.84% 3165.8 7.27% Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer KTGACCTTGA 1e0 -9.462e-02 0.9254 862.0 14.55% 6601.2 15.17% OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer YATGCATATRCATRT 1e0 -9.249e-02 0.9254 93.0 1.57% 780.4 1.79% ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer GCACAYAGTAGGKCY 1e0 -1.276e-02 0.9994 27.0 0.46% 293.2 0.67% REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer GGMGCTGTCCATGGTGCTGA 1e0 -4.120e-03 1.0000 6.0 0.10% 106.6 0.24% Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer SNGCACCTGCHS 1e0 -0.000e+00 1.0000 808.0 13.64% 7336.6 16.85% ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer GNMCAGGTGTGC 1e0 -0.000e+00 1.0000 1391.0 23.48% 12007.2 27.58% E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer NVCACCTGBN 1e0 0.000e+00 1.0000 1936.0 32.68% 16623.4 38.19% ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer VCAGGTRDRY 1e0 0.000e+00 1.0000 2269.0 38.30% 19216.1 44.15%