Information for 14-ACTTAAGCCA (Motif 15)

T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A
Reverse Opposite:
C A G T C A T G T C A G G T A C G C A T G A C T G C T A C T G A A T C G A C G T
p-value:1e-43
log p-value:-9.902e+01
Information Content per bp:1.650
Number of Target Sequences with motif5684.0
Percentage of Target Sequences with motif72.40%
Number of Background Sequences with motif26853.6
Percentage of Background Sequences with motif65.10%
Average Position of motif in Targets379.5 +/- 213.6bp
Average Position of motif in Background375.7 +/- 221.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ACTTAAGCCA
-CTTAATCCC
 T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACTTAAGCCA
--ATAATCCC
 T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A
A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACTTAAGCCA
--TTAATCCC
 T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A
A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.68
Offset:3
Orientation:forward strand
Alignment:ACTTAAGCCA-
---TAATCCCN
 T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ACTTAAGCCA
-GCTAATCC-
 T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACTTAAGCCA-
-NYTAATCCYB
 T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A A C G T
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ACTTAAGCCA
--TTAATCCT
 T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A
A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ACTTAAGCCA----
NANANTTAATCCCNNNN
 A C G T A C G T A C G T T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACTTAAGCCA----
GATAATTAATCCCTCTT
 A C G T A C G T A C G T T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACTTAAGCCA
ACCACTTAA----
 A C G T A C G T A C G T T G C A T A G C G A C T C G A T C T G A C G T A C A T G A G T C G T A C G T C A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T