Information for 5-RSCACVSASACC (Motif 10)

C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
Reverse Opposite:
C T A G A T C G A C G T T A C G G A C T T A C G A T G C A T C G C A G T C A T G A T G C G A C T
p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.518
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif22.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets91.4 +/- 53.4bp
Average Position of motif in Background90.9 +/- 46.6bp
Strand Bias (log2 ratio + to - strand density)3.5
Multiplicity (# of sites on avg that occur together)2.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---RSCACVSASACC
AGCAACAGCCGCACC
 A C G T A C G T A C G T C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RSCACVSASACC-
AGGNCANNGTGACCT
 A C G T A C G T C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RSCACVSASACC-
AGCGGCACACACGCAA
 A C G T A C G T A C G T C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RSCACVSASACC--
GGTCANNGTGACCTN
 A C G T C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RSCACVSASACC
--CACGCA----
 C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RSCACVSASACC
GCCACRCCCACY
 C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T

KLF9/MA1107.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RSCACVSASACC
GGCCACACCCACC
 A C G T C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
T C A G T A C G T G A C A T G C T G C A A T G C C T G A A T G C T G A C G A T C G T C A A G T C G A T C

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--RSCACVSASACC
GGACCACCCACG--
 A C G T A C G T C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:RSCACVSASACC
-GCACGTNC---
 C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RSCACVSASACC
GGCACGCGTC--
 C T G A T A C G G T A C G T C A T A G C T A C G A T G C C T G A A T G C T G C A T A G C G A T C
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T