Information for 3-CCAGGCAW (Motif 2)

A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
Reverse Opposite:
C G T A C A G T A C T G A G T C A T G C G A C T A T C G A C T G
p-value:1e-66
log p-value:-1.521e+02
Information Content per bp:1.793
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif20.02%
Number of Background Sequences with motif1916.9
Percentage of Background Sequences with motif4.00%
Average Position of motif in Targets102.9 +/- 52.6bp
Average Position of motif in Background101.5 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGCAW----
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CCAGGCAW
CTTCCNGGAA-
 A C G T A C G T A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
A G T C G A C T C A G T G T A C A G T C A T C G T C A G A C T G G T C A C G T A A C G T

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGCAW
TCTAGACA-
 A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGCAW
ATGCCAGACN-
 A C G T A C G T A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCAGGCAW
CCAGACAG
 A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:6
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------CCAGGCAW
NNNCTTTCCAGGAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCAGGCAW--
CCWGGAATGY
 A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T A C G T A C G T
A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CCAGGCAW
ACATGCCCGGGCAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGCAW
TGCCCAGNHW-
 A C G T A C G T A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

STAT1/MA0137.3/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCAGGCAW
TTTCCAGGAAA
 A C G T A C G T A C G T A G T C A T G C C T G A A T C G C T A G G T A C G T C A C G A T
A C G T A G C T A C G T T G A C G A T C C T G A C T A G C A T G C T G A G T C A C T G A