Information for 3-TTGTCCTAGC (Motif 4)

A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G G T A C A C G T C G T A A C T G A T C G C G T A A G T C C T G A C G T A
p-value:1e-14
log p-value:-3.321e+01
Information Content per bp:1.945
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif26.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets113.9 +/- 29.5bp
Average Position of motif in Background100.1 +/- 52.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----TTGTCCTAGC-
GNNATTTGTCGTAANN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTGTCCTAGC
BNTGDCCTTG-
 A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TTGTCCTAGC
CCATTGTTTT---
 A C G T A C G T A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTGTCCTAGC
CCATTGTTNY---
 A C G T A C G T A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TTGTCCTAGC
-TGACCTYA-
 A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TTGTCCTAGC
CTCATTGTC-----
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTGTCCTAGC
CTGTTCCTGG
 A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTGTCCTAGC--
NNHYTGACCTAGWTT
 A C G T A C G T A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TTGTCCTAGC
CCTTTGTTTT---
 A C G T A C G T A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TTGTCCTAGC
YCTTTGTTCC---
 A C G T A C G T A C G T A C G T A G C T A C T G A C G T A T G C A G T C A C G T C G T A A C T G A G T C
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T