Information for 4-CTACAGGTCA (Motif 5)

A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A
Reverse Opposite:
A C G T A C T G C T G A A G T C A G T C A C G T A C T G A C G T C G T A A T C G
p-value:1e-12
log p-value:-2.842e+01
Information Content per bp:1.929
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif48.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets91.5 +/- 58.0bp
Average Position of motif in Background93.6 +/- 58.6bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CTACAGGTCA
--TRAGGTCA
 A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTACAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.73
Offset:4
Orientation:forward strand
Alignment:CTACAGGTCA
----AGGTCA
 A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CTACAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NR2F2/MA1111.1/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTACAGGTCA--
-CAAAGGTCAAA
 A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A A C G T A C G T
A C G T G A T C G T C A C G T A C T G A C A T G C T A G A C G T G A T C C T G A C T G A C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTACAGGTCA
ANGNAAAGGTCA
 A C G T A C G T A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

NR4A1/MA1112.1/Jaspar

Match Rank:7
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTACAGGTCA-
-AAAAGGTCAC
 A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A A C G T
A C G T C G T A C T G A C G T A G T C A A T C G T C A G A G C T G T A C C T G A G T A C

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CTACAGGTCA
ATCAAGGTCA
 A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:9
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTACAGGTCA--
CYWSTGGTCARA
 A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A A C G T A C G T
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTACAGGTCA
--AGRGGTCA
 A T G C A C G T C G T A A G T C C G T A A C T G A C T G G A C T A G T C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A