Information for 14-TTGTGACCAA (Motif 17)

A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C T G A C G T A G T C C G T A A G T C C T G A C G T A
p-value:1e-10
log p-value:-2.359e+01
Information Content per bp:1.972
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets134.3 +/- 52.6bp
Average Position of motif in Background95.4 +/- 75.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTGTGACCAA----
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTGTGACCAA---
-TYTGACCASWRG
 A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T
A C G T G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTGTGACCAA
---TGACCT-
 A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTGTGACCAA---
---TGACCTARTT
 A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTGTGACCAA---
---TGACCTARTT
 A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORB/MA1150.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTGTGACCAA---
--NTGACCTAATT
 A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGTGACCAA----
NNHYTGACCTAGWTT
 A C G T A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TTGTGACCAA
RTCATGTGAC---
 A C G T A C G T A C G T A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTGTGACCAA----
--BTGACCTAVTTW
 A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTGTGACCAA--------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T