Information for 16-GCCTCATCAGAG (Motif 19)

A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T G T A C A C G T C T A G C G T A A C G T A C T G C T G A A T C G A C T G A G T C
p-value:1e-9
log p-value:-2.139e+01
Information Content per bp:1.911
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.8 +/- 64.3bp
Average Position of motif in Background123.2 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx8/MA0705.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCTCATCAGAG
--CTAATTAG--
 A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCCTCATCAGAG---
ACCCCTAATTAGCGGTG
 A C G T A C G T A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

GSX1/MA0892.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCCTCATCAGAG
-CCTAATTAAA-
 A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
A C G T G T A C A T G C G A C T G T C A T C G A G C A T G A C T C G T A T C G A G C T A A C G T

PH0097.1_Lhx6_2/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCTCATCAGAG---
TCCACTAATTAGCGGTT
 A C G T A C G T A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCTCATCAGAG
-NCTAATTA---
 A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCTCATCAGAG
-GCTAATTAGC-
 A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCTCATCAGAG
AGCTCATTAT--
 A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

PH0027.1_Emx2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCCTCATCAGAG---
ACCACTAATTAGTGGAC
 A C G T A C G T A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C G T
G C T A T A G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G T A C G G C T A A G T C

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCTCATCAGAG
--CTAATTAG--
 A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCCTCATCAGAG
-CCTAATTACC-
 A C T G A G T C A T G C A G C T G T A C C G T A A C G T A G T C C G T A A C T G C G T A A C T G
A C G T T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C A C G T