Information for 17-CGGGCAAGAC (Motif 23)

A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A C G T A C T G A G T C A G T C A G T C A C T G
p-value:1e-7
log p-value:-1.694e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets127.6 +/- 53.4bp
Average Position of motif in Background118.9 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCAAGAC
TNNGGGCAG---
 A C G T A C G T A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGGCAAGAC-
AAGGCAAGTGT
 A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Smad4/MA1153.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGGGCAAGAC-
---TCTAGACA
 A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCAAGAC
NGTGGGCAT---
 A C G T A C G T A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGGGCAAGAC-
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGGGCAAGAC-
AGGTGHCAGACA
 A C G T A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

POL011.1_XCPE1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGGGCAAGAC-
-GGGCGGGACC
 A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T
A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGGGCAAGAC--
----CCAGACAG
 A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCAAGAC
VGCTGGCA----
 A C G T A C G T A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGGGCAAGAC--
GCCGCGCAGTGCGT
 A C G T A C G T A G T C A C T G A C T G A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T