Information for 4-AGACACGT (Motif 3)

C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T
Reverse Opposite:
C T G A A G T C A C T G A C G T A C T G A C G T A G T C A C G T
p-value:1e-53
log p-value:-1.233e+02
Information Content per bp:1.908
Number of Target Sequences with motif250.0
Percentage of Target Sequences with motif6.24%
Number of Background Sequences with motif889.5
Percentage of Background Sequences with motif1.98%
Average Position of motif in Targets102.1 +/- 46.9bp
Average Position of motif in Background97.5 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes2/MA0616.1/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---AGACACGT--
TAACGACACGTGC
 A C G T A C G T A C G T C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T A C G T
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C

HEY2/MA0649.1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AGACACGT---
-GACACGTGCC
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T A C G T A C G T
A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AGACACGT-
-GHCACGTG
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T
A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G

Npas2/MA0626.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AGACACGT---
-NACACGTGCN
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T A C G T A C G T
A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

Creb3l2/MA0608.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGACACGT--
-GCCACGTGT
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T A C G T
A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T

HEY1/MA0823.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGACACGT---
-GACACGTGCC
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T A C G T A C G T
A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

Mlxip/MA0622.1/Jaspar

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:AGACACGT--
--ACACGTGC
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T A C G T
A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

CLOCK/MA0819.1/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGACACGT---
-AACACGTGTT
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T A C G T A C G T
A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGACACGT-
-GNCACGTG
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T
A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G

Arnt/MA0004.1/Jaspar

Match Rank:10
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:AGACACGT-
---CACGTG
 C G T A C T A G C G T A A G T C C G T A G T A C A C T G A G C T A C G T
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G