Information for 16-GACTAGTT (Motif 30)

A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T C G T A A C T G A C G T A G T C
p-value:1e-3
log p-value:-7.977e+00
Information Content per bp:1.530
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif85.8
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets110.0 +/- 40.6bp
Average Position of motif in Background111.5 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GACTAGTT------
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GACTAGTT---
-ACTAGTTAAC
 A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GACTAGTT-------
ANNNCTAGTTAACNGNN
 A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

GRHL2/MA1105.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GACTAGTT----
NNAAACTGGTTTGNC
 A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G T C A C T G A C T G A C T G A T A G C G C A T C A T G A T C G G C A T G A C T C G A T A C T G C A G T G A T C

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GACTAGTT--
--CTAATTAA
 A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GACTAGTT--
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0107.1_Msx2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GACTAGTT------
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0033.1_Gbx1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GACTAGTT------
TGCCACTAATTAGTGTA
 A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

PH0092.1_Lhx2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GACTAGTT-------
TAAACTAATTAGTGAAC
 A C G T A C G T A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GACTAGTT---
-ACTAATTAAC
 A C T G C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C