Information for 6-ASTTGTCCTAGC (Motif 5)

C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C C G A T G T C A A C T G A C T G C G T A A G T C C T G A C T G A A T C G A C G T
p-value:1e-31
log p-value:-7.335e+01
Information Content per bp:1.911
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets98.9 +/- 20.6bp
Average Position of motif in Background114.4 +/- 38.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ASTTGTCCTAGC
-BNTGDCCTTG-
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ASTTGTCCTAGC-
GNNATTTGTCGTAANN
 A C G T A C G T A C G T C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C A C G T
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ASTTGTCCTAGC
--CTGTTCCTGG
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ASTTGTCCTAGC
---TGACCTYA-
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ASTTGTCCTAGC--
NNHYTGACCTAGWTT
 A C G T C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ASTTGTCCTAGC
---TGACCT---
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ASTTGTCCTAGC-
---TGACCTTGAV
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C A C G T
A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ASTTGTCCTAGC-
---TGACCTARTT
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:ASTTGTCCTAGC-
---TGACCTARTT
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ASTTGTCCTAGC----
--TTGACCTANTTATN
 C G T A A T G C A G C T A G C T C T A G A C G T A G T C A G T C A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A