Information for 22-CGGTTGTTCT (Motif 24)

A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C G T A A G T C C G T A C G T A A G T C A G T C A C T G
p-value:1e-16
log p-value:-3.728e+01
Information Content per bp:1.530
Number of Target Sequences with motif5668.0
Percentage of Target Sequences with motif95.68%
Number of Background Sequences with motif40534.2
Percentage of Background Sequences with motif93.12%
Average Position of motif in Targets378.1 +/- 214.8bp
Average Position of motif in Background376.3 +/- 221.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)2.90
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGGTTGTTCT
CCATTGTTNY
 A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CGGTTGTTCT
NCCATTGTTC-
 A C G T A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CGGTTGTTCT---
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0119.1_Foxa2_2/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGGTTGTTCT----
NCNTTTGTTATTTNN
 A C G T A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CGGTTGTTCT---
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGTTGTTCT----
TAATTGTTCTAAAC
 A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGGTTGTTCT
CCATTGTTC-
 A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGGTTGTTCT--
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGGTTGTTCT
CCTTTGTTTT
 A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGGTTGTTCT
TGTCGGTT-----
 A C G T A C G T A C G T A G T C A C T G A C T G A C G T A C G T A C T G A C G T A C G T A G T C A C G T
C G A T C A T G C G A T G A T C T C A G A T C G G C A T G C A T A C G T A C G T A C G T A C G T A C G T