Information for 7-TGTCTGGNWA (Motif 5)

A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A
Reverse Opposite:
C G A T C G T A G T A C G T A C A G T C C G T A C T A G C T G A G T A C G T C A
p-value:1e-44
log p-value:-1.016e+02
Information Content per bp:1.690
Number of Target Sequences with motif1754.0
Percentage of Target Sequences with motif29.61%
Number of Background Sequences with motif9492.0
Percentage of Background Sequences with motif21.81%
Average Position of motif in Targets370.7 +/- 212.9bp
Average Position of motif in Background379.0 +/- 216.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.89
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTGGNWA--
NNTNNTGTCTGGNNTNG
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGNWA
CTGTCTGG---
A C G T A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---TGTCTGGNWA
VBSYGTCTGG---
A C G T A C G T A C G T A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TGTCTGGNWA
GGTCTGGCAT
A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGNWA
TWGTCTGV---
A C G T A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Smad4/MA1153.1/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TGTCTGGNWA
TGTCTAGA--
A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A
G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGTCTGGNWA
WDNCTGGGCA
A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGTCTGGNWA--
TGTCTGDCACCT
A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGNWA--
CTGTCTGTCACCT
A C G T A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGTCTGGNWA------
-GYCTGGYYTNTGTCA
A C G T A C T G A G C T A G T C A C G T A C T G C A T G C A T G G C A T G C T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A