Information for 13-RGCTWAGC (Motif 11)

C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C
Reverse Opposite:
A C T G G T A C A C G T C G T A C G T A C A T G A G T C A G C T
p-value:1e-51
log p-value:-1.177e+02
Information Content per bp:1.782
Number of Target Sequences with motif1843.0
Percentage of Target Sequences with motif23.47%
Number of Background Sequences with motif6929.8
Percentage of Background Sequences with motif16.80%
Average Position of motif in Targets369.9 +/- 211.5bp
Average Position of motif in Background378.7 +/- 223.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:RGCTWAGC
GGATTAGC
 C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:RGCTWAGC---
-YCTTATCWVN
 C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A G C T A T G C G A C T G C A T C G T A A C G T A G T C C G A T T A C G A T G C

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---RGCTWAGC-----
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-RGCTWAGC
NGGATTAN-
 A C G T C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:RGCTWAGC---
-YCTTATCTBN
 C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A G C T A T G C G A C T G C A T C G T A A G C T G T A C C G A T A T C G A G T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--RGCTWAGC
VRGGATTARN
 A C G T A C G T C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

GATA2/MA0036.3/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RGCTWAGC---
TTCTTATCTTT
 C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C A C G T A C G T A C G T
C G A T A G C T A G T C G C A T G C A T C G T A G C A T A G T C G C A T A G C T G A C T

GATA3/MA0037.3/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:RGCTWAGC-
-TCTTATCT
 C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C A C G T
A C G T A G C T A T G C G A C T C G A T C G T A A C G T A G T C C G A T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RGCTWAGC
RGGATTAR-
 A C G T C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:RGCTWAGC--
NNCTTATCTN
 C T G A A C T G G T A C C G A T C G A T C G T A A C T G A G T C A C G T A C G T
A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C