Information for 21-WGCGAACA (Motif 20)

G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A
Reverse Opposite:
G A C T A T C G C G A T A C G T G T A C A T C G A G T C C G A T
p-value:1e-29
log p-value:-6.809e+01
Information Content per bp:1.711
Number of Target Sequences with motif4370.0
Percentage of Target Sequences with motif55.66%
Number of Background Sequences with motif20312.1
Percentage of Background Sequences with motif49.24%
Average Position of motif in Targets371.4 +/- 213.8bp
Average Position of motif in Background372.8 +/- 223.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RBPJ/MA1116.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--WGCGAACA
CCTGGGAAAG
 A C G T A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A
A G T C T A G C A G C T T C A G A C T G A C T G C G T A G T C A T G C A T A C G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--WGCGAACA
CSTGGGAAAD
 A C G T A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----WGCGAACA
AAGGTGTKAA--
 A C G T A C G T A C G T A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--WGCGAACA
GGTGCCAAGT
 A C G T A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--WGCGAACA
CGTGCCAAG-
 A C G T A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:WGCGAACA---
-TGGAACAGMA
 G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A A C G T A C G T A C G T
A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:WGCGAACA
AGATAASR
 G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A
G C T A A T C G G C T A G A C T G C T A T C G A T A G C T C G A

HINFP/MA0131.2/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-WGCGAACA---
NCGCGGACGTTG
 A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A A C G T A C G T A C G T
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--WGCGAACA--
TATGTAAACANG
 A C G T A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------WGCGAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G T A G C A C T G C G T A C G T A T A G C C T G A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A