Information for 5-AAATCCCG (Motif 4)

C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
Reverse Opposite:
G T A C C T A G A C T G A T C G G T C A C G A T A C G T C G A T
p-value:1e-85
log p-value:-1.966e+02
Information Content per bp:1.716
Number of Target Sequences with motif3940.0
Percentage of Target Sequences with motif50.18%
Number of Background Sequences with motif16182.8
Percentage of Background Sequences with motif39.23%
Average Position of motif in Targets371.6 +/- 210.0bp
Average Position of motif in Background375.6 +/- 221.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.49
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:AAATCCCG
TAATCCCN
 C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AAATCCCG
CTTAATCCC-
 A C G T A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AAATCCCG
NYTAATCCYB
 A C G T A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AAATCCCG
TTAATCCC-
 A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-AAATCCCG
YTAATCCY-
 A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-AAATCCCG
TTAATCCT-
 A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:7
Score:0.80
Offset:-6
Orientation:reverse strand
Alignment:------AAATCCCG---
GNNNATTAATCCCTNCN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.79
Offset:-6
Orientation:reverse strand
Alignment:------AAATCCCG---
GANNATTAATCCCTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AAATCCCG
GCTAATCC--
 A C G T A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.79
Offset:-5
Orientation:reverse strand
Alignment:-----AAATCCCG----
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A T G C A G T C G A T C C A T G A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A