Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 7850)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 41243)	% of Background Sequences with Motif
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-448	-1.032e+03	0.0000	2425.0	30.89%	4817.2	11.68%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-421	-9.695e+02	0.0000	2624.0	33.42%	5711.7	13.85%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-409	-9.419e+02	0.0000	2113.0	26.91%	4015.2	9.73%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-404	-9.306e+02	0.0000	2291.0	29.18%	4648.9	11.27%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-401	-9.248e+02	0.0000	2548.0	32.45%	5578.8	13.52%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-389	-8.972e+02	0.0000	2704.0	34.44%	6250.7	15.15%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-355	-8.195e+02	0.0000	1581.0	20.14%	2644.3	6.41%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-324	-7.469e+02	0.0000	1218.0	15.51%	1761.9	4.27%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-147	-3.385e+02	0.0000	827.0	10.53%	1564.4	3.79%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-123	-2.840e+02	0.0000	2796.0	35.61%	9779.2	23.71%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-119	-2.750e+02	0.0000	2119.0	26.99%	6821.3	16.54%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-116	-2.681e+02	0.0000	3044.0	38.77%	11067.6	26.83%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-99	-2.283e+02	0.0000	2381.0	30.33%	8338.7	20.21%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-96	-2.226e+02	0.0000	1611.0	20.52%	5016.8	12.16%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-85	-1.975e+02	0.0000	4681.0	59.62%	20023.5	48.54%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-76	-1.758e+02	0.0000	287.0	3.66%	401.2	0.97%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-76	-1.754e+02	0.0000	2086.0	26.57%	7463.8	18.09%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-72	-1.681e+02	0.0000	277.0	3.53%	390.4	0.95%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-69	-1.607e+02	0.0000	2790.0	35.54%	10905.4	26.44%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-66	-1.528e+02	0.0000	232.0	2.96%	305.3	0.74%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-60	-1.400e+02	0.0000	676.0	8.61%	1785.7	4.33%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-58	-1.348e+02	0.0000	255.0	3.25%	400.6	0.97%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-55	-1.280e+02	0.0000	6409.0	81.63%	30571.9	74.11%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-51	-1.195e+02	0.0000	3844.0	48.96%	16686.4	40.45%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-48	-1.110e+02	0.0000	3580.0	45.60%	15465.5	37.49%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-47	-1.088e+02	0.0000	3362.0	42.82%	14396.0	34.90%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-44	-1.032e+02	0.0000	3687.0	46.96%	16132.5	39.11%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-43	-1.004e+02	0.0000	4784.0	60.93%	21917.1	53.13%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-42	-9.852e+01	0.0000	4946.0	63.00%	22819.8	55.32%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-42	-9.811e+01	0.0000	1947.0	24.80%	7643.8	18.53%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-40	-9.425e+01	0.0000	1836.0	23.39%	7171.9	17.39%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-40	-9.404e+01	0.0000	3844.0	48.96%	17088.4	41.42%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-40	-9.391e+01	0.0000	2014.0	25.65%	8013.3	19.43%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-40	-9.381e+01	0.0000	2389.0	30.43%	9810.2	23.78%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-40	-9.378e+01	0.0000	3328.0	42.39%	14459.0	35.05%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-39	-9.186e+01	0.0000	1643.0	20.93%	6303.5	15.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-39	-9.029e+01	0.0000	1976.0	25.17%	7881.2	19.11%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-37	-8.679e+01	0.0000	2779.0	35.40%	11825.1	28.67%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-37	-8.586e+01	0.0000	1867.0	23.78%	7425.7	18.00%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-37	-8.563e+01	0.0000	1105.0	14.07%	3940.1	9.55%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-36	-8.506e+01	0.0000	2266.0	28.86%	9342.9	22.65%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-36	-8.495e+01	0.0000	1982.0	25.25%	7982.9	19.35%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-36	-8.382e+01	0.0000	3598.0	45.83%	16000.9	38.79%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-34	-8.019e+01	0.0000	976.0	12.43%	3428.1	8.31%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-34	-7.935e+01	0.0000	1630.0	20.76%	6399.0	15.51%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-34	-7.880e+01	0.0000	2569.0	32.72%	10917.8	26.47%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-33	-7.693e+01	0.0000	2021.0	25.74%	8283.1	20.08%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-32	-7.545e+01	0.0000	2570.0	32.73%	10977.9	26.61%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-30	-6.951e+01	0.0000	3175.0	40.44%	14107.5	34.20%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-29	-6.845e+01	0.0000	3876.0	49.37%	17721.3	42.96%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-29	-6.791e+01	0.0000	3140.0	39.99%	13960.3	33.84%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-28	-6.608e+01	0.0000	1618.0	20.61%	6525.5	15.82%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-27	-6.260e+01	0.0000	1597.0	20.34%	6477.3	15.70%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-27	-6.240e+01	0.0000	811.0	10.33%	2884.3	6.99%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-26	-6.135e+01	0.0000	2237.0	28.49%	9582.4	23.23%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-26	-6.119e+01	0.0000	3188.0	40.61%	14335.7	34.75%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-26	-6.106e+01	0.0000	4573.0	58.25%	21533.6	52.20%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-26	-6.080e+01	0.0000	2352.0	29.96%	10157.3	24.62%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-26	-6.022e+01	0.0000	3269.0	41.64%	14767.0	35.80%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-25	-5.889e+01	0.0000	2456.0	31.28%	10707.0	25.96%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-25	-5.789e+01	0.0000	2375.0	30.25%	10325.0	25.03%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-24	-5.703e+01	0.0000	2690.0	34.26%	11907.9	28.87%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-24	-5.615e+01	0.0000	3175.0	40.44%	14373.5	34.84%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-24	-5.590e+01	0.0000	1904.0	24.25%	8055.5	19.53%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-24	-5.553e+01	0.0000	1259.0	16.04%	4994.3	12.11%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-23	-5.445e+01	0.0000	2347.0	29.89%	10251.1	24.85%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-23	-5.409e+01	0.0000	2677.0	34.10%	11901.7	28.85%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-23	-5.409e+01	0.0000	4426.0	56.37%	20909.6	50.69%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-23	-5.404e+01	0.0000	3028.0	38.57%	13671.9	33.14%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-23	-5.392e+01	0.0000	3020.0	38.47%	13633.6	33.05%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-23	-5.349e+01	0.0000	2055.0	26.18%	8833.6	21.41%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-23	-5.311e+01	0.0000	741.0	9.44%	2674.5	6.48%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-23	-5.304e+01	0.0000	1466.0	18.67%	6003.9	14.55%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-22	-5.187e+01	0.0000	2215.0	28.21%	9649.7	23.39%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-22	-5.142e+01	0.0000	6401.0	81.53%	31753.9	76.98%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-22	-5.141e+01	0.0000	1040.0	13.25%	4039.4	9.79%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-21	-5.060e+01	0.0000	4074.0	51.89%	19139.7	46.40%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-21	-5.050e+01	0.0000	752.0	9.58%	2751.4	6.67%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-21	-5.010e+01	0.0000	692.0	8.81%	2491.7	6.04%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-21	-5.007e+01	0.0000	6168.0	78.56%	30466.8	73.86%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-21	-4.967e+01	0.0000	1458.0	18.57%	6019.6	14.59%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-21	-4.911e+01	0.0000	3548.0	45.19%	16441.0	39.86%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-20	-4.821e+01	0.0000	1026.0	13.07%	4018.4	9.74%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-20	-4.800e+01	0.0000	1361.0	17.34%	5586.9	13.54%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-20	-4.765e+01	0.0000	1522.0	19.39%	6358.1	15.41%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-20	-4.699e+01	0.0000	3422.0	43.59%	15842.5	38.40%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-20	-4.658e+01	0.0000	1599.0	20.37%	6746.3	16.35%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-20	-4.656e+01	0.0000	3557.0	45.31%	16548.6	40.12%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-19	-4.581e+01	0.0000	1442.0	18.37%	6007.9	14.56%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-19	-4.559e+01	0.0000	3648.0	46.47%	17042.8	41.31%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-19	-4.553e+01	0.0000	1085.0	13.82%	4329.8	10.50%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-19	-4.541e+01	0.0000	2190.0	27.89%	9655.4	23.41%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-19	-4.471e+01	0.0000	4637.0	59.06%	22253.3	53.95%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-19	-4.455e+01	0.0000	733.0	9.34%	2735.1	6.63%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-19	-4.431e+01	0.0000	5263.0	67.04%	25620.2	62.11%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-19	-4.425e+01	0.0000	3122.0	39.77%	14370.3	34.84%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-19	-4.388e+01	0.0000	565.0	7.20%	2002.1	4.85%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-19	-4.383e+01	0.0000	4795.0	61.08%	23117.9	56.04%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-19	-4.382e+01	0.0000	1791.0	22.81%	7727.1	18.73%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-18	-4.283e+01	0.0000	2393.0	30.48%	10720.5	25.99%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-18	-4.246e+01	0.0000	1703.0	21.69%	7325.7	17.76%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-18	-4.226e+01	0.0000	1724.0	21.96%	7431.4	18.01%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-18	-4.216e+01	0.0000	2425.0	30.89%	10895.3	26.41%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-18	-4.160e+01	0.0000	3866.0	49.24%	18275.2	44.30%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-18	-4.155e+01	0.0000	2882.0	36.71%	13213.6	32.03%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-17	-4.120e+01	0.0000	2315.0	29.49%	10367.1	25.13%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-17	-4.072e+01	0.0000	3063.0	39.01%	14155.8	34.32%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-17	-4.005e+01	0.0000	2657.0	33.84%	12110.0	29.36%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-17	-3.990e+01	0.0000	1494.0	19.03%	6363.0	15.42%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-17	-3.958e+01	0.0000	4979.0	63.42%	24212.6	58.69%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-16	-3.894e+01	0.0000	2538.0	32.33%	11537.1	27.97%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-16	-3.864e+01	0.0000	272.0	3.46%	822.7	1.99%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-16	-3.788e+01	0.0000	3147.0	40.08%	14657.5	35.53%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-16	-3.771e+01	0.0000	1323.0	16.85%	5581.2	13.53%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-16	-3.690e+01	0.0000	1861.0	23.70%	8212.8	19.91%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-15	-3.674e+01	0.0000	1960.0	24.96%	8704.6	21.10%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-15	-3.633e+01	0.0000	1913.0	24.37%	8481.3	20.56%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-15	-3.567e+01	0.0000	5728.0	72.96%	28373.2	68.78%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-15	-3.565e+01	0.0000	291.0	3.71%	920.9	2.23%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-15	-3.527e+01	0.0000	2067.0	26.33%	9268.1	22.47%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-15	-3.472e+01	0.0000	3281.0	41.79%	15430.2	37.41%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-14	-3.452e+01	0.0000	1718.0	21.88%	7561.9	18.33%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-14	-3.406e+01	0.0000	1389.0	17.69%	5968.3	14.47%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-14	-3.398e+01	0.0000	540.0	6.88%	2001.8	4.85%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-14	-3.365e+01	0.0000	2450.0	31.21%	11225.8	27.21%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-14	-3.299e+01	0.0000	4152.0	52.88%	20010.1	48.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-14	-3.245e+01	0.0000	3043.0	38.76%	14271.7	34.60%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-14	-3.229e+01	0.0000	319.0	4.06%	1063.5	2.58%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-13	-3.222e+01	0.0000	2850.0	36.30%	13291.2	32.22%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-13	-3.212e+01	0.0000	3893.0	49.59%	18679.6	45.28%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-13	-3.175e+01	0.0000	1773.0	22.58%	7895.0	19.14%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-13	-3.143e+01	0.0000	2526.0	32.17%	11667.4	28.28%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-13	-3.126e+01	0.0000	910.0	11.59%	3735.2	9.05%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-13	-3.113e+01	0.0000	2356.0	30.01%	10817.4	26.22%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-13	-3.091e+01	0.0000	1045.0	13.31%	4379.2	10.62%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-13	-3.068e+01	0.0000	1699.0	21.64%	7554.4	18.31%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-13	-3.062e+01	0.0000	627.0	7.99%	2435.5	5.90%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-13	-3.030e+01	0.0000	1444.0	18.39%	6313.5	15.30%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-13	-3.002e+01	0.0000	1736.0	22.11%	7752.1	18.79%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-13	-3.001e+01	0.0000	925.0	11.78%	3828.0	9.28%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-12	-2.982e+01	0.0000	1080.0	13.76%	4566.9	11.07%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-12	-2.981e+01	0.0000	4811.0	61.28%	23594.6	57.20%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-12	-2.978e+01	0.0000	1244.0	15.85%	5354.3	12.98%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-12	-2.977e+01	0.0000	5842.0	74.41%	29160.6	70.69%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-12	-2.968e+01	0.0000	2179.0	27.75%	9966.5	24.16%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-12	-2.943e+01	0.0000	324.0	4.13%	1110.5	2.69%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-12	-2.911e+01	0.0000	2049.0	26.10%	9330.8	22.62%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-12	-2.857e+01	0.0000	1701.0	21.67%	7614.7	18.46%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-12	-2.855e+01	0.0000	502.0	6.39%	1898.4	4.60%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-11	-2.751e+01	0.0000	2125.0	27.07%	9753.3	23.64%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-11	-2.739e+01	0.0000	1408.0	17.93%	6202.3	15.04%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-11	-2.649e+01	0.0000	1361.0	17.34%	5993.2	14.53%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-11	-2.641e+01	0.0000	2844.0	36.22%	13430.3	32.56%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-11	-2.634e+01	0.0000	2155.0	27.45%	9936.9	24.09%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-11	-2.630e+01	0.0000	1107.0	14.10%	4765.5	11.55%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-11	-2.611e+01	0.0000	414.0	5.27%	1536.6	3.73%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-11	-2.590e+01	0.0000	821.0	10.46%	3409.4	8.26%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-11	-2.561e+01	0.0000	1639.0	20.88%	7381.4	17.89%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-11	-2.549e+01	0.0000	544.0	6.93%	2129.9	5.16%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-11	-2.546e+01	0.0000	1416.0	18.04%	6286.1	15.24%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-11	-2.546e+01	0.0000	865.0	11.02%	3625.9	8.79%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-11	-2.544e+01	0.0000	836.0	10.65%	3488.7	8.46%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-11	-2.536e+01	0.0000	1325.0	16.88%	5843.1	14.16%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-11	-2.536e+01	0.0000	632.0	8.05%	2535.0	6.15%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-10	-2.465e+01	0.0000	1570.0	20.00%	7064.9	17.13%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-10	-2.425e+01	0.0000	677.0	8.62%	2762.8	6.70%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-10	-2.420e+01	0.0000	777.0	9.90%	3232.8	7.84%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-10	-2.419e+01	0.0000	714.0	9.09%	2936.0	7.12%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-10	-2.399e+01	0.0000	3690.0	47.00%	17880.1	43.34%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-10	-2.376e+01	0.0000	595.0	7.58%	2389.1	5.79%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-10	-2.373e+01	0.0000	3871.0	49.31%	18834.1	45.66%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-10	-2.346e+01	0.0000	536.0	6.83%	2122.2	5.14%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-9	-2.279e+01	0.0000	2776.0	35.36%	13198.4	31.99%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-9	-2.257e+01	0.0000	503.0	6.41%	1984.7	4.81%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-9	-2.221e+01	0.0000	1524.0	19.41%	6900.4	16.73%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-9	-2.196e+01	0.0000	2204.0	28.07%	10313.5	25.00%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-9	-2.192e+01	0.0000	2100.0	26.75%	9789.4	23.73%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-9	-2.163e+01	0.0000	3041.0	38.73%	14599.6	35.39%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-9	-2.135e+01	0.0000	2129.0	27.12%	9953.4	24.13%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-9	-2.123e+01	0.0000	3972.0	50.59%	19453.1	47.16%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-9	-2.087e+01	0.0000	2908.0	37.04%	13941.8	33.80%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-9	-2.075e+01	0.0000	699.0	8.90%	2927.1	7.10%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-9	-2.072e+01	0.0000	1408.0	17.93%	6367.0	15.43%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-8	-2.070e+01	0.0000	2170.0	27.64%	10181.3	24.68%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-8	-2.033e+01	0.0000	2286.0	29.12%	10781.4	26.14%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-8	-2.030e+01	0.0000	2066.0	26.32%	9668.4	23.44%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-8	-1.972e+01	0.0000	5135.0	65.41%	25669.0	62.23%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-8	-1.932e+01	0.0000	194.0	2.47%	655.7	1.59%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-8	-1.928e+01	0.0000	1804.0	22.98%	8381.9	20.32%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-8	-1.909e+01	0.0000	964.0	12.28%	4232.3	10.26%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-8	-1.896e+01	0.0000	3654.0	46.54%	17877.1	43.34%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-8	-1.892e+01	0.0000	855.0	10.89%	3709.4	8.99%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-8	-1.878e+01	0.0000	207.0	2.64%	716.0	1.74%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-8	-1.872e+01	0.0000	4615.0	58.78%	22939.5	55.61%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-7	-1.796e+01	0.0000	948.0	12.07%	4181.8	10.14%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-7	-1.783e+01	0.0000	1028.0	13.09%	4574.0	11.09%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-7	-1.780e+01	0.0000	1288.0	16.41%	5853.4	14.19%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-7	-1.780e+01	0.0000	488.0	6.22%	1990.4	4.82%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-7	-1.766e+01	0.0000	183.0	2.33%	624.9	1.51%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-7	-1.765e+01	0.0000	2048.0	26.09%	9666.0	23.43%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-7	-1.747e+01	0.0000	223.0	2.84%	797.0	1.93%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-7	-1.685e+01	0.0000	2830.0	36.05%	13690.9	33.19%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.680e+01	0.0000	3587.0	45.69%	17615.4	42.70%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-7	-1.677e+01	0.0000	466.0	5.94%	1905.1	4.62%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-7	-1.670e+01	0.0000	326.0	4.15%	1263.2	3.06%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-7	-1.651e+01	0.0000	1844.0	23.49%	8673.6	21.03%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-7	-1.639e+01	0.0000	1527.0	19.45%	7084.8	17.17%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-7	-1.637e+01	0.0000	1756.0	22.37%	8234.0	19.96%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-6	-1.561e+01	0.0000	2124.0	27.05%	10124.9	24.54%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-6	-1.527e+01	0.0000	138.0	1.76%	457.7	1.11%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-6	-1.519e+01	0.0000	323.0	4.11%	1271.7	3.08%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-6	-1.513e+01	0.0000	760.0	9.68%	3337.8	8.09%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-6	-1.494e+01	0.0000	637.0	8.11%	2749.4	6.66%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-6	-1.489e+01	0.0000	2445.0	31.14%	11791.7	28.58%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-6	-1.474e+01	0.0000	624.0	7.95%	2691.8	6.53%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-6	-1.474e+01	0.0000	2226.0	28.35%	10677.9	25.88%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-6	-1.461e+01	0.0000	2699.0	34.38%	13107.9	31.78%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-6	-1.450e+01	0.0000	2416.0	30.77%	11658.7	28.26%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-6	-1.441e+01	0.0000	656.0	8.36%	2852.6	6.92%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-6	-1.441e+01	0.0000	1672.0	21.30%	7879.2	19.10%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-6	-1.435e+01	0.0000	4809.0	61.25%	24154.9	58.56%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-6	-1.424e+01	0.0000	51.0	0.65%	124.5	0.30%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-5	-1.379e+01	0.0000	3077.0	39.19%	15095.9	36.59%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-5	-1.350e+01	0.0000	176.0	2.24%	636.4	1.54%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-5	-1.321e+01	0.0000	297.0	3.78%	1182.1	2.87%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-5	-1.321e+01	0.0000	297.0	3.78%	1182.1	2.87%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-5	-1.308e+01	0.0000	2448.0	31.18%	11882.4	28.80%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-5	-1.303e+01	0.0000	709.0	9.03%	3141.6	7.62%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-5	-1.291e+01	0.0000	1262.0	16.07%	5873.8	14.24%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-5	-1.265e+01	0.0000	893.0	11.37%	4051.0	9.82%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-5	-1.255e+01	0.0000	271.0	3.45%	1073.7	2.60%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-5	-1.250e+01	0.0000	1782.0	22.70%	8507.2	20.62%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-5	-1.246e+01	0.0000	1500.0	19.11%	7083.3	17.17%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-5	-1.241e+01	0.0000	489.0	6.23%	2096.7	5.08%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-5	-1.225e+01	0.0000	3648.0	46.47%	18140.8	43.98%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-5	-1.212e+01	0.0000	228.0	2.90%	885.0	2.15%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-5	-1.205e+01	0.0000	328.0	4.18%	1344.3	3.26%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-5	-1.201e+01	0.0000	672.0	8.56%	2987.1	7.24%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-5	-1.188e+01	0.0000	319.0	4.06%	1305.8	3.17%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-5	-1.184e+01	0.0000	2682.0	34.16%	13143.2	31.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-5	-1.161e+01	0.0000	3858.0	49.14%	19272.4	46.72%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-4	-1.147e+01	0.0000	1570.0	20.00%	7474.8	18.12%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-4	-1.145e+01	0.0000	703.0	8.95%	3153.1	7.64%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-1.138e+01	0.0000	2272.0	28.94%	11055.0	26.80%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-4	-1.134e+01	0.0000	1325.0	16.88%	6244.2	15.14%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-4	-1.123e+01	0.0000	1839.0	23.42%	8849.3	21.45%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-4	-1.118e+01	0.0000	949.0	12.09%	4372.0	10.60%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-4	-1.117e+01	0.0000	42.0	0.53%	106.7	0.26%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-4	-1.076e+01	0.0000	462.0	5.88%	2003.2	4.86%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-4	-1.072e+01	0.0000	438.0	5.58%	1889.3	4.58%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-4	-1.053e+01	0.0000	2078.0	26.47%	10100.0	24.48%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-4	-1.031e+01	0.0001	1372.0	17.48%	6520.2	15.81%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-4	-1.028e+01	0.0001	1383.0	17.62%	6577.9	15.95%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-4	-1.026e+01	0.0001	201.0	2.56%	788.4	1.91%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-4	-1.019e+01	0.0001	2948.0	37.55%	14602.9	35.40%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-4	-1.017e+01	0.0001	213.0	2.71%	844.8	2.05%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-4	-1.016e+01	0.0001	1089.0	13.87%	5104.4	12.37%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-1.014e+01	0.0001	1019.0	12.98%	4755.5	11.53%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-4	-9.988e+00	0.0001	704.0	8.97%	3199.2	7.76%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-4	-9.899e+00	0.0001	724.0	9.22%	3300.7	8.00%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-4	-9.898e+00	0.0001	637.0	8.11%	2873.6	6.97%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-4	-9.811e+00	0.0001	473.0	6.02%	2078.1	5.04%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-4	-9.768e+00	0.0001	140.0	1.78%	521.4	1.26%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-9.720e+00	0.0001	141.0	1.80%	527.0	1.28%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-4	-9.677e+00	0.0001	2141.0	27.27%	10464.8	25.37%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-4	-9.639e+00	0.0001	1193.0	15.20%	5645.0	13.68%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-4	-9.546e+00	0.0001	883.0	11.25%	4098.6	9.94%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-3	-9.164e+00	0.0002	1527.0	19.45%	7353.9	17.83%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-9.068e+00	0.0002	469.0	5.97%	2077.7	5.04%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-3	-8.794e+00	0.0002	1577.0	20.09%	7624.5	18.48%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-8.727e+00	0.0002	2493.0	31.75%	12326.1	29.88%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-8.695e+00	0.0003	1032.0	13.14%	4873.4	11.81%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-3	-8.686e+00	0.0003	2896.0	36.89%	14415.1	34.94%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-3	-8.677e+00	0.0003	1155.0	14.71%	5492.7	13.32%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-8.648e+00	0.0003	1684.0	21.45%	8176.1	19.82%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-3	-8.573e+00	0.0003	1958.0	24.94%	9581.6	23.23%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-3	-8.494e+00	0.0003	1042.0	13.27%	4931.2	11.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-3	-8.412e+00	0.0003	543.0	6.92%	2455.9	5.95%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-3	-8.354e+00	0.0003	504.0	6.42%	2266.2	5.49%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-3	-8.352e+00	0.0003	2570.0	32.73%	12745.5	30.90%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-8.350e+00	0.0003	231.0	2.94%	957.3	2.32%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-3	-8.332e+00	0.0004	1569.0	19.98%	7605.4	18.44%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-3	-8.287e+00	0.0004	1128.0	14.37%	5372.3	13.02%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-3	-8.001e+00	0.0005	1190.0	15.16%	5697.2	13.81%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-3	-7.960e+00	0.0005	1484.0	18.90%	7190.0	17.43%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-3	-7.799e+00	0.0006	287.0	3.66%	1232.6	2.99%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-3	-7.737e+00	0.0006	93.0	1.18%	338.5	0.82%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-3	-7.599e+00	0.0007	1286.0	16.38%	6202.0	15.03%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-7.403e+00	0.0009	345.0	4.39%	1519.5	3.68%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-3	-7.320e+00	0.0009	760.0	9.68%	3564.1	8.64%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-7.249e+00	0.0010	410.0	5.22%	1838.4	4.46%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-6.967e+00	0.0013	555.0	7.07%	2559.0	6.20%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-2	-6.838e+00	0.0015	1151.0	14.66%	5552.8	13.46%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-2	-6.730e+00	0.0017	396.0	5.04%	1784.1	4.32%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-6.714e+00	0.0017	4475.0	57.00%	22809.1	55.29%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-2	-6.683e+00	0.0018	240.0	3.06%	1032.1	2.50%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.618e+00	0.0019	1145.0	14.58%	5532.0	13.41%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-2	-6.599e+00	0.0019	3004.0	38.26%	15107.5	36.62%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-6.548e+00	0.0020	646.0	8.23%	3024.6	7.33%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-6.472e+00	0.0021	3058.0	38.95%	15397.6	37.33%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-6.372e+00	0.0023	978.0	12.46%	4698.6	11.39%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.227e+00	0.0027	421.0	5.36%	1921.9	4.66%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-6.215e+00	0.0027	393.0	5.01%	1784.4	4.33%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-2	-5.897e+00	0.0037	489.0	6.23%	2267.9	5.50%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-5.883e+00	0.0038	914.0	11.64%	4397.8	10.66%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-2	-5.808e+00	0.0041	73.0	0.93%	272.9	0.66%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.745e+00	0.0043	562.0	7.16%	2635.9	6.39%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-5.488e+00	0.0056	465.0	5.92%	2162.2	5.24%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.267e+00	0.0069	491.0	6.25%	2299.8	5.58%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-2	-5.195e+00	0.0074	838.0	10.67%	4045.5	9.81%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-4.909e+00	0.0098	357.0	4.55%	1647.1	3.99%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-4.813e+00	0.0108	1186.0	15.11%	5836.5	14.15%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.666e+00	0.0124	183.0	2.33%	804.9	1.95%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-4.657e+00	0.0125	99.0	1.26%	406.9	0.99%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-4.604e+00	0.0132	323.0	4.11%	1489.1	3.61%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-4.470e+00	0.0150	71.0	0.90%	280.3	0.68%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-4.416e+00	0.0157	161.0	2.05%	704.4	1.71%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-4.416e+00	0.0157	161.0	2.05%	704.4	1.71%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-4.405e+00	0.0159	963.0	12.27%	4721.1	11.44%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-4.372e+00	0.0163	156.0	1.99%	681.8	1.65%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-4.267e+00	0.0181	914.0	11.64%	4479.7	10.86%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-4.119e+00	0.0209	577.0	7.35%	2777.5	6.73%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-4.081e+00	0.0216	1169.0	14.89%	5794.5	14.05%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-4.062e+00	0.0220	323.0	4.11%	1507.4	3.65%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-4.050e+00	0.0222	646.0	8.23%	3129.9	7.59%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-4.044e+00	0.0223	88.0	1.12%	365.6	0.89%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-4.009e+00	0.0230	170.0	2.17%	757.1	1.84%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-3.957e+00	0.0241	119.0	1.52%	513.7	1.25%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.924e+00	0.0249	1347.0	17.16%	6719.1	16.29%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.923e+00	0.0249	171.0	2.18%	764.8	1.85%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.907e+00	0.0251	827.0	10.53%	4056.0	9.83%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-3.719e+00	0.0303	391.0	4.98%	1859.7	4.51%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-3.565e+00	0.0352	316.0	4.02%	1490.3	3.61%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.537e+00	0.0361	202.0	2.57%	926.7	2.25%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.329e+00	0.0443	302.0	3.85%	1429.1	3.46%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-1	-3.188e+00	0.0508	1352.0	17.22%	6800.5	16.49%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-3.128e+00	0.0538	2044.0	26.03%	10391.3	25.19%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-3.020e+00	0.0598	168.0	2.14%	774.6	1.88%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.010e+00	0.0602	159.0	2.03%	730.0	1.77%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.926e+00	0.0653	359.0	4.57%	1732.3	4.20%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.860e+00	0.0695	714.0	9.09%	3542.6	8.59%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.690e+00	0.0822	49.0	0.62%	205.9	0.50%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.686e+00	0.0822	440.0	5.60%	2154.9	5.22%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.579e+00	0.0913	1261.0	16.06%	6381.2	15.47%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-2.433e+00	0.1053	158.0	2.01%	743.8	1.80%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.431e+00	0.1053	43.0	0.55%	181.9	0.44%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.382e+00	0.1102	890.0	11.34%	4481.3	10.86%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.370e+00	0.1112	321.0	4.09%	1566.1	3.80%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.345e+00	0.1137	617.0	7.86%	3079.8	7.47%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-2.239e+00	0.1260	499.0	6.36%	2481.5	6.02%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.136e+00	0.1394	1138.0	14.49%	5785.9	14.03%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.032e+00	0.1541	38.0	0.48%	164.0	0.40%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.937e+00	0.1690	505.0	6.43%	2532.4	6.14%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.884e+00	0.1777	799.0	10.18%	4053.1	9.83%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.861e+00	0.1814	177.0	2.25%	860.2	2.09%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.852e+00	0.1824	187.0	2.38%	911.1	2.21%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.774e+00	0.1967	127.0	1.62%	611.4	1.48%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.773e+00	0.1967	8.0	0.10%	28.5	0.07%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.687e+00	0.2134	570.0	7.26%	2886.3	7.00%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.678e+00	0.2147	219.0	2.79%	1082.7	2.62%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.585e+00	0.2350	34.0	0.43%	153.8	0.37%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.518e+00	0.2506	239.0	3.04%	1193.7	2.89%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.505e+00	0.2533	164.0	2.09%	810.0	1.96%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.472e+00	0.2611	1879.0	23.93%	9725.0	23.57%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.438e+00	0.2693	143.0	1.82%	706.6	1.71%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.400e+00	0.2790	949.0	12.09%	4881.9	11.83%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.380e+00	0.2838	3466.0	44.15%	18054.7	43.77%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.362e+00	0.2881	2802.0	35.69%	14575.0	35.33%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.189e+00	0.3418	395.0	5.03%	2022.3	4.90%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.133e+00	0.3605	135.0	1.72%	680.7	1.65%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.019e+00	0.4026	820.0	10.44%	4256.6	10.32%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-9.723e-01	0.4209	102.0	1.30%	518.6	1.26%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-9.401e-01	0.4335	361.0	4.60%	1868.8	4.53%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.089e-01	0.4461	131.0	1.67%	672.1	1.63%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.005e-01	0.4486	520.0	6.62%	2703.9	6.55%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.754e-01	0.4588	407.0	5.18%	2115.5	5.13%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-7.987e-01	0.4941	2013.0	25.64%	10549.7	25.57%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.740e-01	0.5051	39.0	0.50%	200.6	0.49%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.556e-01	0.5131	22.0	0.28%	113.0	0.27%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-7.170e-01	0.5319	4.0	0.05%	19.0	0.05%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.694e-01	0.5564	408.0	5.20%	2145.8	5.20%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.687e-01	0.5564	828.0	10.55%	4353.1	10.55%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-6.502e-01	0.5642	11.0	0.14%	57.9	0.14%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-6.145e-01	0.5832	242.0	3.08%	1278.3	3.10%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-5.789e-01	0.6027	358.0	4.56%	1894.1	4.59%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.541e-01	0.6163	1910.0	24.33%	10071.5	24.41%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.461e-01	0.6196	742.0	9.45%	3924.6	9.51%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.050e-01	0.6440	202.0	2.57%	1079.2	2.62%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.897e-01	0.6522	1192.0	15.18%	6309.2	15.29%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.642e-01	0.6673	180.0	2.29%	967.1	2.34%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.395e-01	0.7540	612.0	7.80%	3284.6	7.96%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.258e-01	0.7624	871.0	11.09%	4661.1	11.30%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.234e-01	0.7624	62.0	0.79%	349.6	0.85%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.455e-01	0.8221	14.0	0.18%	88.5	0.21%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.781e-01	0.8771	3016.0	38.42%	16067.9	38.95%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.631e-01	0.8881	150.0	1.91%	854.6	2.07%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.179e-01	0.9268	237.0	3.02%	1343.3	3.26%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.872e-02	0.9424	191.0	2.43%	1099.9	2.67%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-8.647e-02	0.9516	1280.0	16.30%	6964.9	16.88%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.334e-02	0.9522	16.0	0.20%	115.8	0.28%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-8.292e-02	0.9522	42.0	0.53%	270.2	0.66%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-8.185e-02	0.9522	226.0	2.88%	1299.5	3.15%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.793e-02	0.9522	198.0	2.52%	1147.8	2.78%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.226e-02	0.9823	484.0	6.16%	2740.8	6.64%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.912e-02	1.0000	353.0	4.50%	2060.7	5.00%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.133e-02	1.0000	995.0	12.67%	5586.2	13.54%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.081e-02	1.0000	271.0	3.45%	1626.3	3.94%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.053e-03	1.0000	812.0	10.34%	4629.4	11.22%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.982e-03	1.0000	35.0	0.45%	271.5	0.66%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.570e-04	1.0000	7.0	0.09%	98.7	0.24%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	1051.0	13.39%	6350.6	15.39%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	1721.0	21.92%	10358.1	25.11%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	2490.0	31.72%	14558.1	35.29%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	2915.0	37.13%	17170.1	41.62%